Caenorhabditis elegans (nematode): CELE_F56A3.2
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Entry
CELE_F56A3.2 CDS
T00019
Symbol
slx-1
Name
(RefSeq) Structure-specific endonuclease subunit SLX1 homolog
KO
K15078
structure-specific endonuclease subunit SLX1 [EC:3.6.1.-]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
CELE_F56A3.2 (slx-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_F56A3.2 (slx-1)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
CELE_F56A3.2 (slx-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLX1_C
GIY-YIG
PHD_NSD
zf-HC5HC2H
zf-HC5HC2H_2
PHDvar_NSD
Prok-RING_1
FANCL_C
zf-RING_2
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
172157
NCBI-ProteinID:
NP_491541
WormBase:
WBGene00018909
Ensembl:
WBGene00018909
UniProt:
P91351
LinkDB
All DBs
Position
I:<5182736..5186236
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AA seq
443 aa
AA seq
DB search
METFILSSDSDDDSGPPPSKRRTIEGIPRSFSGDKKIRFSFGASNMSQDTTQEIIPEDTD
TVPLTIPSTPALSGKFDSKTPKSVRRRSVSMSCFTPIVETINQPPTNQACSSFLQKEYNF
HDLSSDEEGGDGGAGCSKDEDKIIEDNLNLRALLSPEKKKRKEKIEEVQNEFYGVYCLIS
RSDRPCYKNRCYIGYTVDPNRRIMQHNGGRDKGGAKKTDSRGPWDMVCVVHGFPNHVAAL
HFEWAWQNPLVSKSLKEKQLRKERKETPFAFQLRIACELMNSSAFCRFALTFRWLITTEE
LPFPTSCVPPDHTKLRFGKVKKEMSLVPSKREDYLEMGECRICGKDIEKLWSLVRCISAT
CPSHFHSKCLSENGLKLKNEHVDHVYPLKANCPTCGQFYLWGDIIREQRRIIKISTKCAE
EFQNMVVRKELPHREISPISSKK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggagacattcatattgtcgtctgattctgatgatgattctggaccaccaccatcaaaa
agaagaacaattgaaggaattcctaggagctttagtggagataagaaaattaggttctca
ttcggtgcctccaatatgtcgcaggacacaactcaagaaataattccagaagatacagac
acagttcccctcacaattccatctacacctgctctgtccggcaaatttgactcgaaaact
ccaaaatccgttcgtcgtcgatcagtatcgatgagctgtttcacaccgattgttgaaaca
atcaatcaacctccaacaaatcaagcgtgctccagttttcttcaaaaggaatataatttt
catgatttgagtagtgacgaagaaggaggtgacggaggagcaggttgttccaaggatgaa
gacaaaataattgaggataatctgaatttgcgagcacttctcagtcctgaaaagaagaaa
cgcaaggaaaagatcgaggaagttcaaaatgagttttacggagtttattgtctcatcagt
cgtagcgaccgtccgtgttacaaaaatcgatgttacataggctatacggtagatccgaat
cgacgaattatgcagcacaatggtggaagagataagggtggtgcaaagaaaacggatagt
cgaggaccgtgggatatggtatgtgttgtgcatggattcccgaaccacgtggcagctctt
cattttgagtgggcgtggcagaacccactggtctcaaaatctttgaaggaaaaacagttg
agaaaagagagaaaagagactccgttcgcatttcaactccgtatcgcctgcgaactgatg
aacagttccgcattctgccgatttgcgctcacttttcgatggctgattacgacagaagaa
cttccatttccaacaagctgtgtaccaccggatcacacaaaacttcgttttggaaaagtg
aagaaagagatgagcctggtgccatcgaaacgagaagattatttggaaatgggagaatgt
agaatttgtggaaaagatattgagaagctctggagtcttgtcagatgtatttccgcaact
tgtccatcacattttcactccaaatgcttgtcggaaaacggtttgaaactgaaaaacgaa
catgtggaccacgtatacccgctgaaagccaattgcccaacatgtggacaattttattta
tggggagatattatcagagagcaacgacggattatcaagatctccacaaaatgcgctgaa
gagttccaaaacatggttgtgcggaaagaactccctcatcgagaaatcagtccaatttcg
tcgaaaaaataa
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