Caenorhabditis elegans (nematode): CELE_H12C20.2
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Entry
CELE_H12C20.2 CDS
T00019
Symbol
pms-2
Name
(RefSeq) Mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03430
Mismatch repair
cel03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CELE_H12C20.2 (pms-2)
03460 Fanconi anemia pathway
CELE_H12C20.2 (pms-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_H12C20.2 (pms-2)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
CELE_H12C20.2 (pms-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
MutL_C
HATPase_c_3
HATPase_c
TssR_C
Motif
Other DBs
NCBI-GeneID:
55285961
NCBI-ProteinID:
NP_001369798
WormBase:
WBGene00004064
Ensembl:
WBGene00004064
UniProt:
G5EFG5
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All DBs
Position
V:complement(11566804..11569903)
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AA seq
805 aa
AA seq
DB search
MSQNKIERISKEVAERLTTAQVVVSLSSAIRQLIDNSIDAGSTIIDIRVKNNGFESIEVQ
DNGSGIEARNFDALCKPHSTSKLTQFSDFDKLATLGFRGEALNALCTVSSVSIFTRASDT
EIGTRLTYDHSGNIICRQSAARELGTTIIVNKLFETLPVRRKELERSQKREFVKLLSTVQ
SFALLCPHIKILCTNNINGKKTNLICTPGGTTSIQDVVANLFGIARKIENSKIGSGLIPI
QQNQPDVEIMTIHSVPMEEMHFFDLFKIRGFVSSCEHGCGRGTSDRQFVYINNRPVEYSR
VCSVINDVYKQFNKKQYPIIVLFIDVPPEKIDVNVTPDKKTVMLEKERHLLAVVRASMMK
TYLKIVGSHSTVRSSVEDRRIMNLSQQSFSNASFMSSKSSTPDDFNNTTLNSTYPEDSLL
NTSDLLKQRKENRSPPAKKSCPMIRRTEPFHSVPSTSNSRTQRLENFSFTMEPKRVEVSK
KIPSKSDKKLTDEELRSAVIEENPLKKAGEIDDIEILEQSQESQDVNESQCSQDSQTSQN
SRVSYFTLRPQQKIKFSMKLLREAYSPKTDETDDNTEEAEVSAEKDVLNEITTKINKEEN
DDAERQLSRSLTKDDFSKMKIIGQFNHGFIICRLRGHLFIVDQHASDEKYNFERLQSSAK
LTKQPLFMPTALGFGAVQELIIRENLPIFHANGFDFEFSENDGCIKTFLTARPELLNQQL
TNSDLEEILAVVSQYPNQMYRPVRIRKIFASKACRKSVMIGKPLNQREMTQIIRHLAKLD
QPWNCPHGRPTIRHLASLPDRAEFE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaaataaaattgaacgaatatcaaaggaagtagcagaacgattgacaaccgcc
caggttgttgtcagcttgtcaagtgcaattcggcagttaatcgacaattcaatcgatgct
ggttcgacaattatcgatatccgcgtaaagaataatggttttgaaagtatagaagttcag
gataacggctccggaattgaagcaagaaactttgacgcactctgtaaaccacattctaca
tcgaaactcacacaattttccgattttgataaattagctacattgggattcagaggagaa
gctttaaatgctctctgtactgtaagctcagtcagtatcttcacacgtgcatcagacact
gaaattggcactcgactcacttacgatcattctggaaatatcatttgccgtcaatctgct
gctagagaacttggaactacgattattgtgaataaactttttgagactcttcctgtgcgt
cgaaaagagctggaaagaagtcaaaaaagagaattcgttaaattattaagcactgttcaa
tcgtttgctctcctctgccctcacattaaaatactttgcacaaataatatcaatggaaag
aaaaccaatctaatttgcactccaggaggaactacatcaattcaagacgtcgttgcaaat
ttgtttggtatcgcccgcaagattgaaaattcgaaaatagggtcaggactgattcctatt
caacaaaaccagccagatgtagagattatgacaatccactcggttccaatggaggaaatg
cattttttcgaccttttcaagattcgtggttttgttagtagctgtgaacatggatgcggt
cgtggaacatctgatcgtcaatttgtttatatcaacaataggcctgtggaatattcaaga
gtctgcagtgttatcaacgatgtttataagcaattcaacaaaaaacaatacccgatcatt
gttctcttcatcgatgttccacccgaaaaaatcgacgttaatgtaacacccgataagaaa
acagttatgttggagaaagaacggcatttgcttgcagtggttcgagcatcaatgatgaag
acttatttgaaaattgttggatcacactcgacagtgagaagtagtgtagaagatcgaaga
attatgaatctttctcaacaaagtttttccaatgcaagtttcatgtcttcaaaatcgtcg
actccagatgattttaataacacgactctgaattccacgtatcctgaagattccctactc
aatacttctgatcttctgaaacaacggaaagaaaacagatcaccaccagcgaaaaagtca
tgtccgatgatcagaaggactgaaccatttcatagtgttccttccacttcaaactcgaga
acacagcgcctggaaaatttctcatttacgatggaaccaaaaagagtagaagtttccaaa
aagatcccttcgaaatcagacaagaagctcactgatgaagaattgagaagtgctgtgatt
gaagaaaatccactgaaaaaagctggagagatcgatgacattgaaattcttgagcaatca
caagaatcacaagatgtaaatgaatcacaatgttcacaggattctcaaacttctcaaaat
tctagagtatcatattttacgctgcgacctcaacagaaaataaaattctctatgaagttg
ctccgtgaagcatactcgccgaaaactgatgaaacagacgataacacagaagaagctgaa
gtatctgctgaaaaggatgtattgaatgaaataacaacaaaaatcaataaagaagagaat
gatgatgccgagagacaattatccagatcattgacaaaagacgatttttcaaaaatgaaa
atcattggtcaattcaaccacggattcatcatttgccgcctacgtggtcatctattcatc
gttgatcagcatgccagcgacgaaaaatataattttgaacgtcttcagagcagtgctaaa
ctcactaaacagccacttttcatgccaactgcgcttggttttggagctgtacaagagttg
atcattcgtgagaatttgcccattttccacgcaaatggtttcgatttcgaattcagcgaa
aatgatggatgcattaaaacatttttgactgcaaggcccgagcttctaaatcaacaactc
acgaatagtgatctcgaagaaattctggcagtggtatcacaatatcctaatcagatgtac
cgtccagttcgtattcgtaaaatttttgcgtccaaagcatgcagaaaatccgtaatgatt
ggaaaaccattgaatcaacgtgaaatgacacaaattattcgtcatctggcgaagctagat
caaccatggaactgtccgcatggaagacccacaattcgtcacttggcatctttacctgat
cgagccgaatttgaataa
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