Caenorhabditis elegans (nematode): CELE_K07F5.13
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Entry
CELE_K07F5.13 CDS
T00019
Symbol
npp-1
Name
(RefSeq) Nucleoporin Nup54 alpha-helical domain-containing protein
KO
K14308
nuclear pore complex protein Nup54
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CELE_K07F5.13 (npp-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_K07F5.13 (npp-1)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CELE_K07F5.13 (npp-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
STAT_int
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
177836
NCBI-ProteinID:
NP_001379121
WormBase:
WBGene00003787
Ensembl:
WBGene00003787
UniProt:
Q21295
LinkDB
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Position
IV:9858488..9862119
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AA seq
612 aa
AA seq
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MFARRGGITGIKAEDMPKNLPNLPDLPTTSASQAPAPATQNVSSPARRNLFGAPNDANRT
LFTNSPASGTTSGTSGLFGTSSTTSGGLGGIGSTQQTAKSPVATRLAAFKSGTLGAGSLS
GNTPTSFATPSALPGTNAPQSSFLSPANNLNVAPAAYRPPYSTFGGSTPFGAASTGTAAG
STLFGSSTAKPATGGFFGSSSGSTLGGLGATQQQQQPVVQQQQVIQQYHPFVKAVGDPKL
FGNDNDGVVAKLNQVAAGLGVGKAPYKDGNQLLSFSMEGNLFERFVGIGYNRISERTDDE
GFVTLVLRHPITNLNTEERRDKILEIIKAILGGGPNVEVRYAPGTSMRTLSDGCTEICII
AKEGGFVAGAIKLAQILNDAPKMTQLESQLQVDKTRVLPKVGMSKAQRDRYLETVPDGID
ERIWRQAIKENPAPNKLLPVPVRGWEALRDRQKAQVGESKLFHEAINALGNRVEEANHEH
ADAVVKMEIIRNRHKTLSYRIVRVMLAQWIVSRYSRQIDTDEDVIEAKADTLLAQMNRHN
QVKFYVDKFYEILESKPDKLQESMWKMFDMTIEDEHYARRVLTKFVNICSGLYESTHQQI
ESLEACRRALEG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcccgacgtgggggcatcaccggaatcaaagcagaagacatgccgaagaatctt
ccaaatcttcccgatttacctacgacatcagcatctcaagctccagccccagcaacccag
aatgttagttcaccagcccgtcgcaatttgtttggagcacccaatgacgctaaccgcacg
cttttcacaaattctccggcatctggaaccacttctggaacttcaggactcttcggaaca
tcatcaacgacatctggaggtctcggcggtattggatccacacaacaaactgccaaatca
cccgttgccacaagattggcagcattcaaatcaggaactttgggggctggtagtctttct
ggtaatactccaacatcttttgccacaccatctgcgttaccaggaactaatgccccacag
tcatcttttctatcaccggcaaacaacttgaatgtggctccagcagcttatcgtcctccc
tactcaacatttggaggatcgaccccattcggagcagcgtcgactggaacagccgcggga
tcaacgctttttggatcgagtactgcaaagccagctacaggcggattttttggttccagc
tcagggtctactcttggtggtcttggagcaactcaacaacaacaacagcctgttgttcag
cagcaacaagttattcagcagtatcacccatttgtgaaagctgtcggagatccaaagctc
tttggaaatgataatgatggagttgttgctaagttgaatcaagttgctgccggtttgggt
gtcggaaaagctccatacaaagatggaaatcagcttctatcgttttcaatggaaggaaac
ttgtttgaacgatttgttggaatcggatacaatcgtatttcggagcgaaccgacgatgag
ggatttgtaactttggtgctgcgtcatcctattacaaacttgaacacagaagaacgccgt
gacaaaattcttgaaattatcaaagctattcttggtggcggaccaaatgtagaagttcga
tatgctcctggtacttcgatgagaacactttctgatggatgcacagaaatctgtattatc
gccaaagaaggcggatttgttgcaggagctattaaacttgctcaaatcctcaatgatgct
ccaaaaatgacccaattagaatcgcagttgcaagtggataaaacaagggttcttcctaaa
gttggaatgtcgaaagcacaaagagatagatatttggagacagttcctgatggaatcgat
gagcgtatttggagacaagcaatcaaagaaaacccagctccaaacaaacttcttcctgtt
ccagtacgtggatgggaagcattaagagacagacagaaggctcaagttggcgagtcgaaa
ctattccacgaggcaattaatgcattgggaaatcgtgttgaagaagctaatcatgaacat
gcagatgcagttgttaagatggagattattcgtaatcgccataaaactctctcgtacaga
attgttcgtgttatgcttgcacaatggattgtatcaagatattcacgtcaaattgacact
gatgaggatgtaattgaagctaaagctgatacacttcttgcccaaatgaatcgtcataat
caagtgaagttttatgtcgacaaattctacgagattttggaatcaaaaccggataaactt
caagaatcaatgtggaaaatgtttgatatgacaattgaagatgaacactatgctcgtaga
gtgcttaccaaatttgttaatatttgctctggcctttacgagtcaacacatcaacaaatc
gaaagtcttgaagcttgtagaagggctctagaaggataa
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