Caenorhabditis elegans (nematode): CELE_M18.5
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Entry
CELE_M18.5 CDS
T00019
Symbol
ddb-1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03420
Nucleotide excision repair
cel04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
CELE_M18.5 (ddb-1)
09124 Replication and repair
03420 Nucleotide excision repair
CELE_M18.5 (ddb-1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cel04121
]
CELE_M18.5 (ddb-1)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_M18.5 (ddb-1)
Ubiquitin system [BR:
cel04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
CELE_M18.5 (ddb-1)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
CELE_M18.5 (ddb-1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
CELE_M18.5 (ddb-1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
178156
NCBI-ProteinID:
NP_502299
WormBase:
WBGene00010890
Ensembl:
WBGene00010890
UniProt:
Q21554
LinkDB
All DBs
Position
IV:complement(12114810..12121165)
Genome browser
AA seq
1134 aa
AA seq
DB search
MPISYCVSAKKASVVVESVVGNFTGHENVNLIVARGNRIDVQLVSPEGLKNVCEIPIYGQ
VLTIALVKCKRDKRHSLIVVTEKWHMAILAYRDGKVVTRAAGCIADPTGRATDNLFSLTI
HRNGLIAIRAFEGSVKMIQWESGTDLRHFNVRFDYPNVSDFKFVDTGEDDVYRVAFIYDD
DHGKHLQFSDLNMHDKEFRTYSRQASIAADSSVLIPVPHAIGGVIVLGSNSVLYKPNDNL
GEVVPYTCSLLENTTFTCHGIVDASGERFLLSDTDGRLLMLLLNVTESQSGYTVKEMRID
YLGETSIADSINYIDNGVVFVGSRLGDSQLIRLMTEPNGGSYSVILETYSNIGPIRDMVM
VESDGQPQLVTCTGADKDGSLRVIRNGIGIDELASVDLAGVVGIFPIRLDSNADNYVIVS
LSDETHVLQITGEELEDVKLLEINTDLPTIFASTLFGPNDSGIILQATEKQIRLMSSSGL
SKFWEPTNGEIISKVSVNAANGQIVLAARDTVYLLTCIVDEMGALDIQLTAEKKFENEIA
CLDLSNEGDDPNNKATFLVLAFWSTFAMEVIQLPDLITVCHTDLPTKIIPRSIIATCIEE
VHYLLVAFGDGALVYYVFDIKTGTHGEPKKSNVGTRPPSLHRVRNKNRQHLFVCSDRPVI
IFSASKKLVFSNVNVKLVDTVCSLSSSAYRDCLVISDGNSMVFGTVDDIQKIHVRSIPMG
ESVLRIAYQKSTSTYGVCSNRTESKAERVFASKNALVTSQSRPKVASTRADMDESPPNTT
SSFMVLDQNTFQVLHSHEFGPWETALSCISGQFTNDSSTYYVVGTGLIYPDETETKIGRI
VVFEVDDVERSKLRRVHELVVRGSPLAIRILNGKLVAAINSSIRLFEWTTDKELRLECSS
FNHVIALDLKVMNEEVAVADVMRSVSLLSYRMLEGNFEEVAKDWNSQWMVTCEFITAESI
LGGEAHLNLFTVEVDKTRPITDDGRYVLEPTGYWYLGELPKVMTRSTLVIQPEDSIIQYS
QPIMFGTNQGTIGMIVQIDDKWKKFLIAIEKAIADSVKNCMHIEHSSYRTFVFQKRAEPP
SGFVDGDLVESILDMDRSVAMDILSKVSDKGWDPSLPRDPVEILKVIEDLARMH
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgccgatcagttactgtgtttcggcaaagaaggcatccgttgtcgtagaatctgttgtc
ggaaacttcacaggacacgaaaatgttaacttgattgtggctcgtggaaatcgcattgat
gttcaactagtttcaccggaaggactcaaaaatgtctgcgagatcccaatctacggccaa
gtgttgacaattgcacttgtaaaatgtaaacgcgataagcgtcattcattgattgttgtc
accgaaaaatggcacatggcaattttggcgtatcgcgacggaaaagttgtgactcgtgct
gctggatgtattgctgatccgactggaagagcgactgacaatttattcagtctaacgatt
catcgaaacggactcatcgctattcgagctttcgagggtagtgtcaaaatgattcaatgg
gaatctggtactgatctacgtcatttcaatgttagatttgattatccaaatgtctcagac
ttcaagtttgttgacactggagaagatgatgtataccgagttgccttcatctatgacgac
gatcacggaaaacatcttcaattttccgatcttaacatgcatgacaaggaattccgtacc
tattccagacaagccagtattgctgctgattcttcggttttaattccagttcctcatgct
attggaggtgttatagttctcggatcgaactctgtcctatacaagccaaacgacaacctc
ggagaagtagttccatacacttgctctttgctcgagaacacaacattcacatgccacgga
atcgttgatgcttctggtgaaagatttcttctttccgatacagatggacgtcttctaatg
ctactgttgaatgtaactgaaagtcaatcaggatacacagttaaagaaatgcgtatcgat
tatcttggagaaacttcaattgctgattccatcaattatattgacaatggagtagtcttt
gttggttctcgactcggagattcacagcttatcaggcttatgactgaaccgaatggagga
agttattctgtgatacttgaaacctacagtaacattggaccaattcgtgatatggttatg
gtagagtctgatggacaaccacaacttgtaacctgtactggagctgacaaagacggatca
cttcgtgttattcgtaatggaatcggcatcgatgaattggctagtgttgatttggctgga
gtcgtcggcatatttcccattcgtctagattcgaatgctgacaactatgtaattgtttca
ctttctgatgaaacccacgttctgcaaattacgggagaagagcttgaagatgtgaaactt
ttggaaatcaacacagatttgccaacaattttcgcgtccactttgtttggtccaaacgat
tctggaatcattcttcaagcaacggaaaagcagattcgacttatgtcttcttcgggactt
tccaaattttgggaaccaacaaacggtgaaattatttcgaaagtttctgtgaatgcagcc
aacggacaaattgttctcgcagctagagatacagtataccttctcacttgtattgttgat
gaaatgggtgctctcgacattcaattgactgctgaaaagaagtttgaaaacgaaattgca
tgtttggacctttcgaatgaaggagacgatcctaacaataaagcaaccttcttggtttta
gcattttggagtacatttgcgatggaagtaattcagctacctgatcttataactgtgtgc
cacacggatcttccaacaaagatcattcctcgttcgatcattgcaacatgcatagaagaa
gttcattatcttcttgttgctttcggagacggtgcacttgtttattatgtgtttgatatc
aaaacaggaacacacggtgaaccaaaaaagtcaaatgtcggaacacgaccaccgagtctt
catcgtgtacgcaacaagaatcgacaacacttgttcgtctgttctgatcgtccagtgatc
atcttctcggccagcaaaaagcttgtcttctccaatgttaatgttaaactcgtcgatact
gtgtgctcgctgagttccagcgcctatcgagattgtttggtcatttcggatggaaattcg
atggtttttggcacagttgacgatattcagaagatccacgttcgctcgattccaatggga
gaatctgttcttcgtattgcatatcaaaagagcacaagtacatatggagtctgctcgaat
cgaactgaatcgaaggctgaacgagtttttgcttcgaaaaatgcacttgtcacttctcaa
agtcgaccaaaagttgcatccacccgagctgacatggatgaaagtcctccaaataccaca
agcagttttatggttctcgatcaaaacacatttcaagtacttcattcacatgaattcgga
ccatgggaaactgcgttgagttgcatctctggacaattcacaaacgactcgagcacctac
tacgttgttggaactggtcttatctatccagacgaaacagagacgaagatcggtagaatc
gtggtatttgaagttgacgacgtggaaagatcgaaacttcgacgtgtacatgaattggtt
gttcgtggaagtcctttagctattcgaattctgaatggaaaattggttgctgcaattaat
agctcaattagactattcgaatggacaactgataaggaacttcgactggaatgcagtagc
ttcaatcatgtcattgcacttgatcttaaagttatgaatgaagaggttgcagtggctgat
gtgatgagatctgtctctcttctctcgtacagaatgctggaaggaaattttgaggaagtt
gctaaagattggaatagtcaatggatggttacttgcgagttcatcacagctgaatcaatc
cttggaggagaagctcatctgaatctgttcactgtagaagttgataaaacccgtccgatt
actgatgatggtcgatatgtgttggaaccaactggatattggtatctcggagagcttcca
aaagtcatgacaagatcgactcttgtcattcaaccagaagatagtattatccagtacagt
caaccaatcatgtttggaacaaatcagggaacaattggaatgattgtgcagattgatgac
aaatggaaaaagtttttgattgcaattgaaaaggctatcgcagattccgttaaaaactgc
atgcacattgaacattccagttacagaacttttgtgttccagaaaagagcggaaccgcca
tccggattcgtcgatggagatctcgttgaatcgattctcgacatggatcgttctgttgca
atggatatcttgagtaaagtatctgacaaaggatgggatccaagtctgccaagagatcca
gttgaaattctcaaagtcatcgaggatttggcgagaatgcactga
DBGET
integrated database retrieval system
