Caenorhabditis elegans (nematode): CELE_R06C1.1
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Entry
CELE_R06C1.1 CDS
T00019
Symbol
hda-3
Name
(RefSeq) Histone deacetylase
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03082
ATP-dependent chromatin remodeling
cel03083
Polycomb repressive complex
cel04213
Longevity regulating pathway - multiple species
cel04330
Notch signaling pathway
cel04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
CELE_R06C1.1 (hda-3)
03083 Polycomb repressive complex
CELE_R06C1.1 (hda-3)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
CELE_R06C1.1 (hda-3)
04350 TGF-beta signaling pathway
CELE_R06C1.1 (hda-3)
09150 Organismal Systems
09149 Aging
04213 Longevity regulating pathway - multiple species
CELE_R06C1.1 (hda-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cel03036
]
CELE_R06C1.1 (hda-3)
Enzymes [BR:
cel01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
CELE_R06C1.1 (hda-3)
Chromosome and associated proteins [BR:
cel03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
CELE_R06C1.1 (hda-3)
HDAC complexes
Sin3A-HDAC complex
CELE_R06C1.1 (hda-3)
BRAF-HDAC complex
CELE_R06C1.1 (hda-3)
REST complex
CELE_R06C1.1 (hda-3)
SHIP complex
CELE_R06C1.1 (hda-3)
MiDAC complex
CELE_R06C1.1 (hda-3)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
CELE_R06C1.1 (hda-3)
Heterochromatin formation proteins
Other heterochromatin formation proteins
CELE_R06C1.1 (hda-3)
Chromatin remodeling factors
NuRD complex
CELE_R06C1.1 (hda-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
HrpF
Motif
Other DBs
NCBI-GeneID:
173074
NCBI-ProteinID:
NP_493026
WormBase:
WBGene00001836
Ensembl:
WBGene00001836
UniProt:
G5ECH0
LinkDB
All DBs
Position
I:complement(11912793..>11917712)
Genome browser
AA seq
465 aa
AA seq
DB search
MSLQHSKSRVSYYYDGDFGNFYYGQGHPMKPHRVRMTHSLIVNYGLYRKLNVMRPARASF
SEITRYHSDDYINFLRNVKSDNMSTFTDQMARFSVGEDCPVFDGMYEFCQLSCGGSLAAA
ARLNRQESEIAINWMGGLHHAKKSEASGFCYSNDIVLAILELLKHHKRVLYIDIDVHHGD
GVEEAFYTTDRVMTVSFHKHGEYFPGTGDLKDVGAGSGKYYALNVPLRDGVDDVTYERIF
RTIMGEVMARFQPEAVVLQCGADSLAGDRLGVFNLTTYGHGKCVEYMKSFNVPLLLVGGG
GYTIRNVSRCWLYETAIALNQEVSDDLPLHDYFDYFIPDYKLHIKPLAALSNFNTPEFID
QTIVALLENLKQLPHVPSVQMQSISTSCDSIVKTFDEKLIRDHQNDDVRVTQFEEDVQVE
DSAEFYDGQEPETKNIQSMKRHASPICAAQEEMKKNRIDGGENVA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgagcctccaacactcgaaatctcgagtttcctactattatgatggagattttggaaat
ttctactatggacaaggacatccaatgaaaccgcatcgtgttcgaatgacacatagcctt
attgttaattatggattatatcggaagcttaatgtcatgcgtcccgcccgtgcttcattc
tccgaaatcacacgttatcactctgacgactatatcaatttccttcgtaacgttaaatcc
gataatatgtccacattcacagatcaaatggcccgattctcagttggagaggattgtcct
gtctttgatggaatgtatgagttctgccagctatcatgtggtggatcactggctgctgcc
gcccggcttaatcgtcaagaatcagaaattgcaattaactggatgggtggtctacatcat
gcgaagaaatcggaagcttctggattctgttactcgaatgatattgttctggcgattttg
gagcttttgaagcatcataaaagagttctttatattgatattgatgttcatcatggtgat
ggagttgaggaagcattttatacgacagatagagttatgactgtttcatttcataaacat
ggagaatatttccctggaactggagatttaaaggacgttggcgctggaagtggcaagtac
tatgctctgaatgttccacttcgtgatggagtcgatgacgtcacttatgaacggattttc
agaacaattatgggagaagttatggcaagatttcaaccagaagcagttgtgctccaatgt
ggtgccgattcactggcaggagatcggctaggagtattcaatttgactacttatggacac
ggaaaatgcgtggaatacatgaaaagcttcaacgtgccgcttctgttagttggcggtggt
ggatatacgattcgaaatgtctccagatgttggctgtacgagacggcgatcgctttgaat
caagaagtttcagatgatctgcccctccacgactactttgactacttcatcccggactac
aaactacacataaagccgctcgccgctctttcgaacttcaacactcctgaattcattgat
caaacgattgtcgcgcttttggagaatttaaagcaacttccacacgttccatcggtccaa
atgcaatcgatttcgacgagttgtgactcaattgtgaagacttttgacgagaaactgatc
cgagatcatcagaatgatgacgtcagagttactcagttcgaggaagacgttcaggtggaa
gattcggcggaattctacgatggtcaagagccggagacgaagaatattcaatcgatgaaa
cggcacgcgagtccgatttgtgcggcgcaagaggagatgaagaaaaatcggattgatggc
ggcgaaaatgtggcataa
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