KEGG   Caenorhabditis elegans (nematode): CELE_R06C1.1
Entry
CELE_R06C1.1      CDS       T00019                                 
Symbol
hda-3
Name
(RefSeq) Histone deacetylase
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03082  ATP-dependent chromatin remodeling
cel03083  Polycomb repressive complex
cel04213  Longevity regulating pathway - multiple species
cel04330  Notch signaling pathway
cel04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    CELE_R06C1.1 (hda-3)
   03083 Polycomb repressive complex
    CELE_R06C1.1 (hda-3)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    CELE_R06C1.1 (hda-3)
   04350 TGF-beta signaling pathway
    CELE_R06C1.1 (hda-3)
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    CELE_R06C1.1 (hda-3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cel03036]
    CELE_R06C1.1 (hda-3)
Enzymes [BR:cel01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     CELE_R06C1.1 (hda-3)
Chromosome and associated proteins [BR:cel03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     CELE_R06C1.1 (hda-3)
   HDAC complexes
    Sin3A-HDAC complex
     CELE_R06C1.1 (hda-3)
    BRAF-HDAC complex
     CELE_R06C1.1 (hda-3)
    REST complex
     CELE_R06C1.1 (hda-3)
    SHIP complex
     CELE_R06C1.1 (hda-3)
    MiDAC complex
     CELE_R06C1.1 (hda-3)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     CELE_R06C1.1 (hda-3)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    CELE_R06C1.1 (hda-3)
  Chromatin remodeling factors
   NuRD complex
    CELE_R06C1.1 (hda-3)
SSDB
Motif
Pfam: Hist_deacetyl HrpF
Other DBs
NCBI-GeneID: 173074
NCBI-ProteinID: NP_493026
WormBase: WBGene00001836
Ensembl: WBGene00001836
UniProt: G5ECH0
LinkDB
Position
I:complement(11912793..>11917712)
AA seq 465 aa
MSLQHSKSRVSYYYDGDFGNFYYGQGHPMKPHRVRMTHSLIVNYGLYRKLNVMRPARASF
SEITRYHSDDYINFLRNVKSDNMSTFTDQMARFSVGEDCPVFDGMYEFCQLSCGGSLAAA
ARLNRQESEIAINWMGGLHHAKKSEASGFCYSNDIVLAILELLKHHKRVLYIDIDVHHGD
GVEEAFYTTDRVMTVSFHKHGEYFPGTGDLKDVGAGSGKYYALNVPLRDGVDDVTYERIF
RTIMGEVMARFQPEAVVLQCGADSLAGDRLGVFNLTTYGHGKCVEYMKSFNVPLLLVGGG
GYTIRNVSRCWLYETAIALNQEVSDDLPLHDYFDYFIPDYKLHIKPLAALSNFNTPEFID
QTIVALLENLKQLPHVPSVQMQSISTSCDSIVKTFDEKLIRDHQNDDVRVTQFEEDVQVE
DSAEFYDGQEPETKNIQSMKRHASPICAAQEEMKKNRIDGGENVA
NT seq 1398 nt   +upstreamnt  +downstreamnt
atgagcctccaacactcgaaatctcgagtttcctactattatgatggagattttggaaat
ttctactatggacaaggacatccaatgaaaccgcatcgtgttcgaatgacacatagcctt
attgttaattatggattatatcggaagcttaatgtcatgcgtcccgcccgtgcttcattc
tccgaaatcacacgttatcactctgacgactatatcaatttccttcgtaacgttaaatcc
gataatatgtccacattcacagatcaaatggcccgattctcagttggagaggattgtcct
gtctttgatggaatgtatgagttctgccagctatcatgtggtggatcactggctgctgcc
gcccggcttaatcgtcaagaatcagaaattgcaattaactggatgggtggtctacatcat
gcgaagaaatcggaagcttctggattctgttactcgaatgatattgttctggcgattttg
gagcttttgaagcatcataaaagagttctttatattgatattgatgttcatcatggtgat
ggagttgaggaagcattttatacgacagatagagttatgactgtttcatttcataaacat
ggagaatatttccctggaactggagatttaaaggacgttggcgctggaagtggcaagtac
tatgctctgaatgttccacttcgtgatggagtcgatgacgtcacttatgaacggattttc
agaacaattatgggagaagttatggcaagatttcaaccagaagcagttgtgctccaatgt
ggtgccgattcactggcaggagatcggctaggagtattcaatttgactacttatggacac
ggaaaatgcgtggaatacatgaaaagcttcaacgtgccgcttctgttagttggcggtggt
ggatatacgattcgaaatgtctccagatgttggctgtacgagacggcgatcgctttgaat
caagaagtttcagatgatctgcccctccacgactactttgactacttcatcccggactac
aaactacacataaagccgctcgccgctctttcgaacttcaacactcctgaattcattgat
caaacgattgtcgcgcttttggagaatttaaagcaacttccacacgttccatcggtccaa
atgcaatcgatttcgacgagttgtgactcaattgtgaagacttttgacgagaaactgatc
cgagatcatcagaatgatgacgtcagagttactcagttcgaggaagacgttcaggtggaa
gattcggcggaattctacgatggtcaagagccggagacgaagaatattcaatcgatgaaa
cggcacgcgagtccgatttgtgcggcgcaagaggagatgaagaaaaatcggattgatggc
ggcgaaaatgtggcataa

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