Caenorhabditis elegans (nematode): CELE_T06A10.1
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Entry
CELE_T06A10.1 CDS
T00019
Symbol
mel-46
Name
(RefSeq) ATP-dependent RNA helicase
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cel
Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_T06A10.1 (mel-46)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CELE_T06A10.1 (mel-46)
Spliceosome [BR:
cel03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
CELE_T06A10.1 (mel-46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
SLFN-g3_helicase
CMS1
DUF4136
AAA
Motif
Other DBs
NCBI-GeneID:
178469
NCBI-ProteinID:
NP_001255909
WormBase:
WBGene00020284
Ensembl:
WBGene00020284
UniProt:
G5ED26
LinkDB
All DBs
Position
IV:complement(<16855044..>16863481)
Genome browser
AA seq
973 aa
AA seq
DB search
MEFSEVIEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGR
DMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAPTGART
SVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEV
FRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYVV
AKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQL
AVDQLRAKRVKILVSSDLTARGIDADNVNLVVNIDAAANEETYFHRIGRAARFGAHGAAV
TLLEDERALKGFTALAYRGKVTVKRVVEGVHELPGDLVKNQEFWKDLPYFIDFETPPTGP
NDLNKVPDRQSAVESLKSEREASGIVTSSSKKYTRDEMMAMRSDTKNEQSVEEISAKIEN
LSVETETDEKENVVEVKKTFKERLAELKAAKAAAKSQTEPEAPKSEPKSKFKFVPTREKA
KKKYYMRGELQHIREAFTSEQWRAYAETKFDFTEEPFLGGPVESKSAENSQISSSGDVGK
AEILENVEKTEQNPPKIIKSRNVQIGSQEDVGNSKNAEKTPLRGSEASKNAENSQISSSG
DIGKAEILENGENPVKNPPKTIKYNRFEMKKIQKEVPKDSWIPYVKSKWNTTEEPWELDQ
WLRCPFEERLRRQRKREKDERRKVIEDRKKRRDEDRQELVSSGRITKVVEIRETSWQDYQ
ARVRREFEEATEKRRKMMTEGAAEVLRRIGPVVPQRTPPLIYRYRVDMYKRRLDEQDAYL
QHQNKLDDGILKETEAQTTAENPEKSMEMVEIECQTDEIQEELAEDEEYWDEEYWDEEEL
EGSEGSQEIFDDFPDVVEELEGSEGSEEASEAAPRAPQLEHLAAGYLRNMNFQAATQSYI
DLMNSFARNFGGN
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggagttctccgaggtaatcgaggtattagaccgcggcagctcgatcgatgtccaatcg
aattgcacgttcgagtcgctgatgatcggacaaaagacgctggaacgtctgaaaaatagc
caattcgacaggccgtctccagttcaggcccgggccatcccagtcggcttgctgggaaga
gatatgcttgttcaggccaagtcaggaaccggaaaaacgctcgttttctcggttttagcc
gtagaaaacctggattctcgatcttcacacatccaaaaagtcattgtgactccgacgaga
gagatttctgttcaaattaaggaaactgtgcggaaagtcgctccgaccggcgctagaact
tcagtatacgttggaggatccgctcacaagctgaatctcatcgatttgaagcaaacgcgc
ccacaaatcgtcattggaactcctggtcggatagcacagctcgtcaagctcggagcaatg
aacatgtcccatgtggacttttttgtgctcgatgaggcggataagctgatggatgaagtg
tttagagatgatataaatattatcatcaattctctgcctcaaatccgccaagttgccgtg
ttttcagccacctacccgcgaaatcttgacaatttgttgtcgacttttctccgcgacgcg
gcacttgttcggtttaacgctgatgacgttcaactgttcggaatcaagcaatacgtagtc
gcaaagtgctctccaatgctcgaaaagctcacacatgtgctgaaatcgatcagatacgtg
caggcactggtgttttgcgatcagatttcaaaatgcgaacccatcgccactcatctcaaa
tcctcaggcctcgacgtgaccttcgtctccagtgcaatgtcgcaaaaagaccgccaactc
gccgtagatcagctccgcgcgaaacgagtcaaaattctcgtctcctccgacctgaccgcc
cgtggaatcgacgctgacaacgtgaatttggtggtgaacatcgatgccgcagccaacgaa
gagacctatttccaccgtatcggtcgtgcggcacgattcggtgctcacggagcagctgtg
acactgctggaggatgaacgagcattgaagggcttcacagcgttggcttatcggggaaaa
gtcactgtgaagcgggttgttgaaggtgtacacgagttgcctggtgatttggtgaagaat
caggagttttggaaggatttgccgtattttatagattttgaaacaccgcccactggtccc
aacgatctgaacaaggttcccgaccgtcaatcagctgtagaatccctgaaatccgaacga
gaagcttctggaatagtgacgtcatcgtcgaaaaaatacacaagagatgagatgatggcg
atgcgatcggacaccaaaaatgagcaaagtgtagaagaaatttctgcaaaaattgagaat
ttaagcgtggaaactgagactgacgaaaaagagaatgtcgtggaagtgaagaaaacgttc
aaagaacggctcgccgagctgaaggcggcaaaagcggcggcgaagagccaaacggagcca
gaagcgccaaaatcggagccaaaatccaagtttaaattcgttccaacacgagaaaaggcg
aagaagaagtactacatgcgcggcgagctccaacacattcgtgaagccttcacgtcggag
caatggagagcctacgctgagacgaaattcgattttacagaggaaccgtttttggggggt
cctgtagagtcaaaaagtgctgaaaattcgcaaatttcaagctccggggacgttggaaag
gctgaaattctggaaaatgtcgaaaaaacggagcaaaatcccccaaaaatcatcaaatcc
cgaaatgtgcaaattggaagccaagaagacgttggaaattcgaaaaatgccgagaaaact
cccttaagaggatcggaagcatcgaaaaatgctgaaaattcgcaaatttcaagctccggg
gacattggaaaggctgaaattctggaaaatggtgaaaatcccgtgaaaaatcccccaaaa
accatcaaatacaaccgattcgagatgaaaaagatccaaaaagaagtgcccaaggattca
tggattccctacgtaaaatccaaatggaacaccaccgaagaaccatgggagcttgatcaa
tggctccgttgcccgtttgaagaacgtctccgacggcaacgaaaacgcgagaaagacgag
cgtcggaaagtgattgaagatcggaaaaagcggcgagacgaggatcggcaggagcttgtg
tcgagtggaaggatcacgaaggtggtggagattcgggagacaagctggcaggattatcag
gcgagagttcgcagagagtttgaggaagctacggagaaacgacggaaaatgatgacggaa
ggagctgctgaggttctacgcaggattggacctgtggtcccacaacgaacgcctccactg
atctaccgttatcgtgttgatatgtacaaaaggcggctcgacgagcaagatgcctaccta
cagcatcagaataagctggacgatggaattttgaaggagacggaggctcagacgacggcg
gaaaatccagaaaaatcgatggaaatggtggagattgagtgtcaaaccgacgagattcag
gaggaattggcggaagatgaggagtactgggatgaagaatattgggatgaggaggagctg
gaaggatcagaaggatcccaagaaattttcgacgattttcccgatgtggtggaggagctg
gaaggatcagaaggatcagaagaagcatctgaagctgctccacgggctccgcaactggag
catctcgcggcgggatatctacggaatatgaatttccaggcggcaacgcaaagttatatt
gatctcatgaactcgtttgccagaaattttggtggaaattga
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