Caenorhabditis elegans (nematode): CELE_T08G5.5
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Entry
CELE_T08G5.5 CDS
T00019
Symbol
vps-39
Name
(RefSeq) Vacuolar protein sorting-associated protein 39 homolog
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04140
Autophagy - animal
cel04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
CELE_T08G5.5 (vps-39)
04148 Efferocytosis
CELE_T08G5.5 (vps-39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cel04131
]
CELE_T08G5.5 (vps-39)
Membrane trafficking [BR:
cel04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
CELE_T08G5.5 (vps-39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Beta-prop_EML
Clathrin
TPR_Vps41
WD40_WDHD1_1st
BTAD
Motif
Other DBs
NCBI-GeneID:
179902
NCBI-ProteinID:
NP_001041164
WormBase:
WBGene00011625
Ensembl:
WBGene00011625
UniProt:
Q1ZXS5
LinkDB
All DBs
Position
V:complement(14034323..14038378)
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AA seq
926 aa
AA seq
DB search
MYDAYTPCEVALRLPVEVTCLAFQESNQTLLAGGRAGHLYAYTISANRRGFELTNICKSF
HKKAVMELKVCQREDLLLCVSDGQLMAHKLSDPEYKVETLIHKVKPVQTFARFSPKTSGD
LYVIVSSRKKLYLFKWGEKDGHKEFIEVALDYNPVFLDTPTSIRCVGEMVFFSVRNEYFS
MTMQKDKTTTSPSEGSTPEGWNGFVTRLLNFNCQPGIVPMIDRRRVAFVRNEIVVTTDIW
GQRPANVLSDEYKFSEVPMQIVYDSPYLVGMLSKGRVEVRSIFDGQLVQTMSLPKAMTLC
SGARGQVFVAALSDIWILDTSQNLRKNVSHLIQERHFELAIQLAENSNLFAEEQKLEIKK
KAALNLFNQKKFDESFALFGEIKTDISEVLSIIRMFPELLPDGFQSMTGVVSDMPANDRM
RALLALGSYLSEIRTEHAKHIELYNRLYSSGAAKKTDEDEKAKLLLTLRVVDTTLLKCYI
KTKPMLVDSLIRLQSNACTFEDAKKILESEGRLRSLFILYETRKKHEMALDLFIDQSSRP
DADPFFDDAIQQIVEYLQSLGNSNLPLILKYAKWVLAKNLEAGVQIFTSDETEMARNLNR
KAVVEFLKSECPDALIPYLEHVIFKWEEPSSYFHETLLEFYVARVNTLFKDYVHAFPDAF
SDENITRAGDEDGELGLYRKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQH
EQALAIYVNTLKNVPAAEEYCRLYYNAHDETNSQVYLMLFRTLVHPNQQQLHSIPYHADS
TPFGSYRDDVSEASTLVNSTSSYQPDVNTAIKILAKHADKIDTVGALNMLPATTPLRVVF
SAINAVIQTTGRQASTRKMEKSVSQCAMSKKLERKNKAQSTKIIVNFSSECVVCEKKIAV
SAFVRYPDGRLAHLYCHNDSQGGNRN
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgtacgatgcatacacgccttgcgaagtagctctccgattacccgtagaagtaacatgt
cttgcatttcaagaatcgaatcaaaccttgttagccggtggaagagcaggacatctctat
gcatacacaatttcagctaatcgtcgtggattcgagctcacaaatatctgcaaaagcttt
cacaagaaagcagtaatggaactgaaagtttgccaacgtgaagatctccttttgtgcgtg
tccgacggtcaattgatggctcacaagctcagcgatccagagtataaagttgaaacatta
attcacaaagtgaagcctgttcagacttttgcaagattttcacccaagacatctggagac
ctgtacgtaattgtttcgtcacgaaagaagttatatttattcaaatggggagagaaagat
ggccacaaagaatttatagaagttgcattggattataatccagttttcttggatactcca
acatctataagatgcgttggtgaaatggtattcttttctgttcgaaacgagtatttttct
atgacaatgcaaaaagataagacaaccacttcgccaagtgaaggttcaactccggaagga
tggaatggttttgtaactcgtcttttaaatttcaactgtcagcctggcattgtgccaatg
atcgatcgaagaagagttgcatttgtgaggaatgaaatagttgtaaccactgatatttgg
ggacaacgtccggcaaatgtattaagtgacgagtacaagttcagcgaagttcccatgcaa
atcgtatacgattcaccttacttggttggaatgctctcaaaaggccgcgtcgaagttcgt
tcaattttcgatggtcaacttgtacagacaatgtccctcccgaaggctatgacactctgc
agtggtgctcgtggacaagtgttcgtcgctgctctttccgatatttggattcttgatact
tcacaaaatcttcgaaaaaacgtgtctcatttgatacaggaacgtcatttcgagctagca
attcaattggctgaaaattcgaatttatttgcagaagaacagaaattagaaattaaaaag
aaggctgcattgaatttattcaatcagaagaagtttgacgagtcattcgcattatttgga
gaaattaaaaccgatatttcagaagtgctctcaattattcgaatgtttcccgagcttctt
ccagatggatttcaatcaatgaccggagttgtcagtgatatgcctgctaacgacagaatg
cgtgctcttttggctctcggtagttatctatctgaaattcgaactgaacacgcgaagcat
attgaattatacaatcgtttgtactcatcgggagcggcaaagaaaactgatgaagatgag
aaggcaaagctcttgttgacattgagagttgtagatacaacacttctaaagtgttatatt
aagacgaaaccaatgcttgtggattctctaattcgtcttcaaagcaacgcgtgcacattt
gaggatgcaaagaagatcctcgaatctgaaggacgtctccgatctttattcattctttac
gaaacccgcaaaaagcatgaaatggctctcgatttgtttatcgatcaatctagccgcccg
gatgctgatccatttttcgatgatgctattcaacaaattgtcgaatatcttcaaagtctt
ggaaatagcaatttgccactaattctaaagtacgcaaaatgggtactagccaaaaatttg
gaagccggagttcaaatattcactagtgacgaaacagaaatggctagaaatttaaatcga
aaagccgtcgtggaatttttgaaatccgaatgcccggatgcactgattccgtacttggag
cacgtgattttcaaatgggaagaaccttcttcatattttcacgagacacttttggaattc
tatgtggcacgagtcaacactttgtttaaggattatgtacacgctttcccagacgcattt
tcagatgagaatatcactcgcgcgggagacgaggatggcgagctgggcctctaccgaaaa
cgacttttgaaatttctcgaagtttcccattcatacagtccacaaacagtgcttcttcaa
ctagcaccacatgcattttacgaggaaagagctctgattcttggacgactgaaacaacac
gagcaggcgcttgctatatatgtgaatacactgaagaatgtgcctgcagcagaggagtac
tgtagactctactacaatgcacacgatgagaccaattcacaggtgtatctgatgctcttc
cgaactctggtacatccaaatcagcaacaactgcactcgattccttatcacgccgattcg
actccattcggatcatatcgtgatgatgtttctgaagcatcaacgttagtcaactctaca
tcatcgtatcaaccagatgtcaatacagcaatcaagattctggcaaaacatgcagataaa
atcgatacagttggagcattgaatatgcttccagccaccactccgctcagagtcgtgttc
tcggcaattaacgcggtgattcaaactaccggacgacaagcgagcactcgaaaaatggaa
aaatctgtgtcccaatgtgcaatgtcaaagaagctggagcgcaaaaacaaggcgcaatct
actaaaatcatcgtcaatttctcaagtgaatgtgttgtttgtgagaagaaaatcgctgta
agcgcatttgtccggtatccggatggtcgattggcacatctctactgccataatgattct
caaggaggaaacagaaattga
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