KEGG T00019: CELE

Caenorhabditis elegans (nematode): CELE_W01G7.3

Entry

CELE_W01G7.3      CDS       T00019

Symbol

rpb-11

Name

(RefSeq) putative DNA-directed RNA polymerase II subunit RPB11

K03008

DNA-directed RNA polymerase II subunit RPB11

Organism

cel Caenorhabditis elegans (nematode)

Pathway

cel03020

RNA polymerase

cel03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:cel00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CELE_W01G7.3 (rpb-11)
  09124 Replication and repair
   03420 Nucleotide excision repair
    CELE_W01G7.3 (rpb-11)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cel03021]
    CELE_W01G7.3 (rpb-11)
   03400 DNA repair and recombination proteins [BR:cel03400]
    CELE_W01G7.3 (rpb-11)
Transcription machinery [BR:cel03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     CELE_W01G7.3 (rpb-11)
DNA repair and recombination proteins [BR:cel03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CELE_W01G7.3 (rpb-11)

SSDB

Motif

Pfam:

RNA_pol_L_2 RNA_pol_L DUF6847

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

WormBase:

Ensembl:

UniProt:

LinkDB

Position

II:14060085..14060624

AA seq 122 aa
MNAPAAFESFLLLDDKKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGY
KNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIKKCTQSGDQERG
YN

NT seq 369 nt +upstreamnt +downstreamnt
atgaatgcgccagctgctttcgaatcatttttgcttctcgacgacaagaaattctacatt
gaaaaagacacaaaggttccaaatgcggcgatcttcacaatcatgaaggaggatcacacg
ctgggaaatatgctgaaaatccaacttctcaaggacccagaggtgctgttcgccggctac
aagaaccctcacccgttggagcacaagatcttgctccgaatccagacaaccaacaatacg
acgccagctgatgctctcacaacggccataaccgatttggtgggagaactctcgttgctc
gagcatcgaatcgacgcggccatcaaaaagtgcactcaatccggcgaccaggagcgtgga
tataactga

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