Caenorhabditis elegans (nematode): CELE_W03F11.6
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Entry
CELE_W03F11.6 CDS
T00019
Symbol
afd-1
Name
(RefSeq) PDZ domain-containing protein
KO
K05702
afadin
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
CELE_W03F11.6 (afd-1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
DUF6288
RCR
Motif
Other DBs
NCBI-GeneID:
171776
NCBI-ProteinID:
NP_001021659
WormBase:
WBGene00021009
Ensembl:
WBGene00021009
UniProt:
Q9BIC0
LinkDB
All DBs
Position
I:<2160038..>2209644
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AA seq
678 aa
AA seq
DB search
MVLIAVYQGVGDRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNGHSLIGISQEDAARLM
TQSGNEVHFDVRKRAAHRNGLSNWLGSQTPTTSNFIAPSPSTVPPPSYSHVGRTPSYDGQ
PPPSYNHRNGGASGAGGSSGRNSAFVAPLSNSSSNASSSHMQQHYAHHNMMHNGNLSAAP
GAPAGDPKHYRSSSASDLQHDPNASFSQSSMTGSARSSVFDKLPSHYRHSTRPTVIQPTR
PSAQSPSALRKAAAASPVSNLYRPTSASNLFAPPRNSGGLVGYSSNAARESTQDIHRALN
DLELNSPLARSTPNEEYRIPPPRVPTVTSTSSNYAPLHSIRPASMYGYQSPSSSTTVIPA
PKGVASSSNNTSPRVNVTLGGALSSSRSHNSLSQEPAIVIRPVDLNMPKATPPASIRGAV
PTAITQALQLQPNGGGAVLRQVRPASGLRERLQDADVRNLEKTNTALMSYEAVNEELDRL
DAKQNTMTIDEQRRYRELLNVVAEQSRARKLLSEIRSPPTSYQEREIPIHVQKEQQQHRR
ETVIDDIPHSSSSVENVSPVSPPESRKVQFIDEVVQYQTPTSGANHAFFDDVPVLDSPGI
VGTNEIYRDPRQRRLNELQDRNRSSENGAADGAKLGFRDKQRLFARQIGEDTAPRQRMNE
SSAQRLIETDIAATPQKP
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggttcttattgcagtttatcagggtgttggtgatcgtcaaatgggaatttatgtgaag
aaggttgtcgaaggaacaccggctgcacacgatggacgactcgagactggtgatcagtta
ttgagtgttaacggacattcgttaattggaatttcacaggaagacgccgcccgtctcatg
acccaaagtggaaacgaggtgcatttcgacgtccggaaaagagccgctcaccgtaacggg
ctcagcaattggctcggatcccaaacaccgacaacttcaaatttcattgcaccatctcca
tctacagtacccccgccgagttattcacatgttggacggactccgtcttatgatggacaa
ccaccaccgagttataatcacagaaatggtggagccagcggagcaggaggatcatctgga
agaaatagtgctttcgtagcaccactttcgaattcatcatcaaatgcgtcgagtagtcat
atgcaacaacactatgctcatcataatatgatgcataatggcaatttgagtgctgctccg
ggagctcccgcgggggatccgaaacattatcgaagctcgtcggctagtgatttgcagcac
gatccaaacgcctcattctctcaatcatcaatgactggaagtgcgagaagttcagtgttt
gacaagcttccatctcactaccgtcactcgacacggcctacagtaatccagccaacacgt
ccaagtgctcaatctccatcggctcttcgaaaagcggccgccgcctcgccggtcagcaat
ctgtaccgtccgacgtcggcgtcgaatctgtttgcaccgcccagaaattcgggcggtctc
gtcggatattcgagtaacgcggcacgggagtcgacacaggatattcatcgagcgctaaat
gacctggaactcaactcaccgctcgccagatccacgccgaatgaggagtaccgtatcccg
ccgcctagagtacctacagtaacctccacctcctccaactatgcccctcttcattctatt
cgaccggcaagcatgtatggatatcagagcccgagctcttctactacagtaatcccggct
ccaaaaggagtggcttcttcctctaataacacttctccccgagtgaatgtgacgttgggt
ggagcattgagctcatcgagatctcataatagtctttcacaggagccagccattgttatc
aggcctgtcgacctgaatatgccgaaagcgacaccaccggcgtcgattcgtggagctgtg
ccgacggcgattacacaggctcttcaacttcaaccaaacggcggtggagcagtacttcgt
caggttcggccagcatccgggctccgcgagcgacttcaggacgctgatgttcggaatttg
gagaaaacgaacacagcactgatgagctatgaagcagtgaatgaggagctcgatcgactc
gacgctaagcagaatacgatgacaattgacgagcaacggagatatcgagagctactgaac
gttgtcgccgagcagagccgagcaaggaagctgctctcggagatcagatcaccacctaca
tcttatcaagaacgtgaaattccgattcatgtgcaaaaagagcagcagcagcaccggcgg
gaaactgtgattgatgatattccacactcgagctcaagtgttgagaatgtgtcacctgtg
agcccgccggaaagtcgaaaagttcaatttattgatgaagttgtgcagtatcagacgccg
accagcggagccaatcacgctttctttgatgatgtgccggttttggattcgcctgggatc
gtcggcaccaacgaaatctaccgtgatccccgccaacgtcggctcaacgagctccaagac
cgcaatcgcagctcggaaaatggagcggcggacggcgcgaagctcggcttccgcgacaag
cagcgcctattcgcacggcaaatcggcgaggacacggcaccacgccaacgaatgaatgag
agcagtgctcagcggctcattgagacggacattgccgccaccccgcaaaagccataa
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