Caenorhabditis elegans (nematode): CELE_Y32H12A.2
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Entry
CELE_Y32H12A.2 CDS
T00019
Symbol
thoc-5
Name
(RefSeq) THO complex subunit 5
KO
K13174
THO complex subunit 5
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CELE_Y32H12A.2 (thoc-5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y32H12A.2 (thoc-5)
03041 Spliceosome [BR:
cel03041
]
CELE_Y32H12A.2 (thoc-5)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
CELE_Y32H12A.2 (thoc-5)
Spliceosome [BR:
cel03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CELE_Y32H12A.2 (thoc-5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Med15_C
Band_7_1
Motif
Other DBs
NCBI-GeneID:
175735
NCBI-ProteinID:
NP_001254926
WormBase:
WBGene00021311
Ensembl:
WBGene00021311
UniProt:
H2L0N5
LinkDB
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Position
III:complement(5345931..5349401)
Genome browser
AA seq
597 aa
AA seq
DB search
MSVNVRPVKRFVEEQKKKNPEIKLSEKATQLLTDMPKMDSPEKLFNLEDKIATEMGSDRI
FEEFLQDYAFLRNAVEEYLDGKPTSSDTISKIARLRRNTRLTHYGTALMRKEVAERMENV
DAKLLQLQNVTSEVQHIQKEIDRCLDFSAGDEELELVPFEQFHTEASEILANETADNEHE
QYLARLKFENEQRRELLSTLNELEGRRNVLQSDIRGKEVRLQGLKPKLEDLTKVAEPVFE
MVGAKFKDLSIEGEQRKLSLQLPAPLAVAHIHAAAYKEIHDDKLFEFRILGTNDTEKQSK
DETEAMKRKRKEDETTQEKINKMASELLEVHPMSLEFEIECSENIKISMQIQYLTELKVT
TAKWHINTDSKLKKSPFFSIDSLMSDLFENDTGDKCPNDVGEMKIEHLKMNFNSSAKQIG
KPFKFIQEISGSEGETDRIGATEHLRKVITTIRTRISNRAVLDGIIRDLESKKTDDLNLE
PEVKINSFKICDDESFIASIPTSLTKKISNSAATDRFSYKIEASDGNGRKLTAYISIPAD
YPRHTALFGIAAPEDSESSTEVARQIEDRLNTEAHYVDDVKSIKEQLSLLLKHIDLS
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaacgttcgcccggtgaagcgatttgttgaagaacagaaaaagaaaaatccg
gaaattaaattatctgaaaaagccacacaactcctgactgatatgccgaaaatggacagc
cctgagaaactgttcaatctggaagacaaaattgcaacggaaatgggtagcgatcgaatt
ttcgaagaatttctccaagattacgcatttttgagaaatgctgttgaagaatacttggat
ggaaagccaacatcctcggatactatctcgaaaatcgcgcgtttacgccgaaatacacga
cttacccactatggaactgccctaatgcgaaaagaggtggccgagaggatggagaacgtt
gatgcgaagcttctacagttacagaatgttactagcgaggtgcaacacattcaaaaagaa
atcgatcgttgtttggactttagcgccggtgatgaggagcttgagttggtccctttcgag
caatttcacactgaagcgtcggagattcttgcaaatgagacggctgataacgagcacgaa
caatatttggcaagattgaagttcgagaatgagcagagacgagaacttctctctacactc
aacgagctcgagggtcgtcgaaacgtactgcaaagcgacatacgtggaaaagaagttcgt
cttcaaggtcttaaaccaaaacttgaagatctcacaaaagttgcggagcccgtcttcgaa
atggttggcgccaaattcaaagatttatcgattgaaggggagcagcgaaagctctcattg
caattgccggctccacttgctgttgcacatatacatgctgctgcttataaggaaattcat
gatgacaagctcttcgaattccgaattcttggcacaaacgacacagaaaaacaatcgaaa
gatgaaacagaagccatgaaaagaaaacgaaaagaagatgaaacaactcaagaaaaaatt
aataaaatggcttcagaactgcttgaagttcatccaatgagcctggaatttgagattgaa
tgctctgaaaatattaaaatttcaatgcaaattcagtatctgacagaacttaaagtgaca
actgcgaaatggcatataaatacggactcaaagctcaaaaaatcaccgtttttctcgatt
gactcactgatgtcagatttattcgaaaatgatacgggagacaagtgtccaaatgatgtt
ggagaaatgaagattgaacatttgaaaatgaacttcaactcaagtgcaaaacaaatcgga
aaaccgttcaaatttattcaagaaatcagtggatccgaaggcgaaactgatcgaattgga
gcaacagagcatttgagaaaagtgatcacaacgattagaacgagaatatccaatcgtgca
gtacttgatggaattattcgagatttggaatctaagaaaactgacgatttgaatttggaa
ccagaagtgaaaattaattccttcaagatttgtgatgatgaatcttttattgcttcaatt
ccaacaagccttacgaagaaaatttcaaattccgcagcaaccgacagattttcatataaa
attgaggcttccgatggaaatggcagaaaactcactgcttatatctcaattcccgccgac
tatccacgacacactgcactttttggaattgctgctccagaagattccgaatcaagtaca
gaagttgccagacaaattgaggatcgtctgaacactgaagctcactatgttgatgatgtg
aagagtattaaagaacaacttagcctgcttcttaagcatatcgatctttcctga
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integrated database retrieval system
