Caenorhabditis elegans (nematode): CELE_Y47G6A.11
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Entry
CELE_Y47G6A.11 CDS
T00019
Symbol
msh-6
Name
(RefSeq) DNA mismatch repair protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CELE_Y47G6A.11 (msh-6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_Y47G6A.11 (msh-6)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CELE_Y47G6A.11 (msh-6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
AAA_29
Motif
Other DBs
NCBI-GeneID:
171914
NCBI-ProteinID:
NP_491163
WormBase:
WBGene00003422
Ensembl:
WBGene00003422
UniProt:
Q9N3T8
LinkDB
All DBs
Position
I:3449326..3462174
Genome browser
AA seq
1186 aa
AA seq
DB search
MSKRQSSLMSFFTKTPKSEKPEEEVKEKSVEEPKSLKNDTPKISNDSEKKVLKRSNSKTV
SSPVKTPRNASKRPKVVVCSSSEGEDDDGDEDFEMKEAEEHESSDESEADENASDCEVVE
SPESTPQSTPKRGGKKKISKPLLAENTPKSVKMAGKSKKVIPDGEAVSMAGVLDKMDKIM
DGEGERKRIVEKTTGAKNKAVELEPAERFDHESFDFLKPDKIRDGFKRPMSDPEYDPKTL
WVPPDFHQKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALNIAFMRGSY
AHAGFPEHAASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKTKEKVVRREVCRVTSN
GTRTYGVLDGVDLGSASSTLDPTAKHLLAIKEFHNPETGKSSYGVCMIDTTTAHIRIGQF
EDDDYRSQLRTLLANVIVVQAIVERGSISSTTKSIINGILFSVPVEHLLPKKQFMTAEDV
VRIVSNEDYYGSDASEWPEVLKGMLEDSSILPKPSTDWQLALSAFGAIFWYLRDSLIDVD
MLSMRNVTIYNSNSMENDQKKEKIDWNGKNLILDGTALENLNIVPNGRDSHLTSLYYVIN
KCSTPFGRRLLRSWLLQPTCDPKKLEQRQKAIKWLVSPDASSFMTTATATLKKIPDLDRL
LQKIHTIGLKYRSEKHPDSRAIFFDTIKTNQKKIAELLAAIDGFKLCNKLRKEYIKVQKE
GEGCELLDELLGNEQEMEEVDENIYFFEKMFDRSTAMKDGKIVPNAGCDEEYDEALNRVK
EALNELNDYKDSVAKKYSCSIKFVDSGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTP
DSEQLVAALDAVEKEKSKLGDDATRRVFEQFGHKNPIWLETVKLVSSFDVLTSLALFAKS
SPFEMCMPEFDFNATDPYLIVDKGVHPCLALQSRNEVTQTTSFIANSTTMGASEAAVMLL
TGPNMGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFI
ELKETDIMLKNATKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSI
CDSFTNHPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQ
VVRNAYLESNKFASNLIIDPKIRHLVECARDDNFDVGELKRMIEAI
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgacaaagctcactgatgtctttcttcaccaaaactccgaaatctgagaag
ccggaggaagaagttaaagaaaaaagtgttgaggagccgaaatcactgaaaaatgatact
ccgaagatatcaaatgattccgaaaagaaggtcttgaaacgatccaactcaaaaaccgtc
agctcaccggtaaaaactccaagaaacgcgtcaaaacgtccaaaagtcgtcgtttgttcc
tcttctgaaggtgaagatgacgatggagatgaggattttgagatgaaagaagccgaagaa
cacgaatcatcggatgaatcggaagctgatgagaatgcgagtgactgtgaagttgttgaa
tcgccagagagcacaccgcagagcacaccgaaacgaggaggaaagaagaagatttcgaaa
cctctcctcgctgaaaacaccccaaaaagcgtaaaaatggctggaaaatcgaaaaaagtg
attcccgacggagaagccgtgtcgatggccggagttttggacaaaatggataaaattatg
gacggagagggtgaacgcaagcgaatcgtcgagaaaaccaccggagccaagaacaaggca
gtggagctggagcccgctgaaagatttgatcatgaatcttttgattttctgaagccggat
aaaattcgtgatggtttcaagcgtccgatgtctgatccagaatatgatccaaaaactctc
tgggttcctccagattttcatcaaaaacagacaccaggtcatcgacaatggtggactatg
aaatcacagcatttcgatacaattctcctttttaaagttggaaaattctatgaaacatat
catatggatgcagtggaagttgttcgtgcacttaatattgcttttatgcgtggatcatat
gctcatgctggcttcccggagcacgcagcctcaaaattcgctgatcaactaatgaatcac
ggctataaagtggctcggatcgagcagactgagacacctcaaatgttggaggagagaaat
cagaaaacgaaaacaaaggaaaaagttgtgaggagagaagtgtgtagggttacatcgaat
ggaacacgaacttatggagttttggatggtgttgatttgggaagtgcttcgtcgacgttg
gatccgactgctaagcatttgttggcgattaaggaattccataacccagaaacaggaaaa
tcctcctacggagtgtgcatgattgacacaacgactgcacacattcgtatcggacaattt
gaagatgatgactatcgttcacaactgcgtacacttctcgcgaatgtgattgttgttcag
gcgatcgttgagcgtggatccatctcttcaaccactaaatcaattattaatggaattctt
ttctcggttcccgttgagcatttactcccgaaaaagcaatttatgacagccgaagatgtt
gtgagaattgtttcaaatgaagattattatggatctgatgcttctgaatggccggaagtt
ctgaagggaatgctggaggattccagtattcttccaaaaccttcaaccgactggcaactg
gctctttcagcatttggagcaattttctggtatcttcgtgacagcctaatcgatgtggat
atgttatcaatgaggaatgtgactatttataattcgaattctatggaaaatgatcagaaa
aaggaaaagattgactggaacggaaagaatctgattctcgacggaactgcactggaaaat
ctgaatattgtaccaaatggcagagattctcatctcacttccctctactatgtcattaac
aaatgctccacaccatttggccgtcgacttctccgttcgtggcttcttcaaccgacttgt
gatccgaaaaagctcgagcaacgacagaaagccattaagtggctcgtttcaccggatgcc
tcgtcatttatgacgactgcgacggctacgttgaaaaagattccagatttggatagactt
ttgcaaaaaatccacacaattggcctcaaataccgttccgaaaagcatccggacagtcgt
gcaatcttcttcgatacaatcaaaacaaatcagaaaaaaatcgccgaacttttggccgca
attgatggattcaaactgtgtaataaactgagaaaagagtatataaaagtacaaaaagag
ggtgaaggatgtgaattacttgatgaattacttggaaatgagcaagaaatggaagaagtc
gatgagaatatctactttttcgagaaaatgttcgatcgaagcacggctatgaaagatggg
aaaattgtgccgaatgcgggatgtgatgaggaatatgatgaagctttgaatcgagtgaag
gaagcattgaatgaattgaatgattataaggattctgttgccaagaaatatagttgctcg
atcaaattcgtggattcaggaaaagtaaagtacctactggaaatgcctgaaaacacgaaa
gtctcatcgtcattcgagctgaaatctcgtcgaaagggcttcatccgatactctacaccg
gattctgagcaactggtcgccgctcttgatgcagttgaaaaggaaaaatcaaaattgggt
gatgatgcgactcgtcgtgtattcgaacaatttggacacaaaaatccaatttggttggag
actgtgaagcttgtctcgagctttgatgtgctcacctcattggctttgttcgcaaaatct
tctccattcgagatgtgtatgccggaattcgatttcaacgccacggatccttatctgatc
gttgacaagggtgtacatccatgtttggcgttacaatcaagaaatgaagttacccagaca
acatcgttcattgcgaatagtaccacaatgggagcatctgaagctgctgtgatgcttctg
actggtccgaatatgggtggaaaatctacgttgatgaggcaaaccgctgttctggcgatt
ctcgctcatattggttcaatggttcctgccttctcgatgcggctcactccaatcgatcga
attttcactcgtattggagccaacgataggattatgtgcggagaatcaacattcttcatt
gagctaaaagaaactgatattatgctcaaaaatgcgacaaagcattctctcttgctcgtc
gacgagctcggtcgtggcacaagtacattcgatggaactgccattgcttctgctgtttta
caaaagatttctgatgatttggcgtgtcgaacattcttttctacacattatcactcgatt
tgtgactcatttactaatcatccgaatgtcagattggcccatatgaaatgtgtcgtggat
aaggagaacaatgaggatccaacaatggaagatgtcactttcttatacgaactcgaatct
ggaatttgcccaaaatcctacggtttctatgcagcaaaactggctggaattgaccatcaa
gtcgttcgaaatgcctatttggaaagcaataaattcgcatcaaatctcatcattgatccc
aaaatccgacatcttgttgaatgtgctcgtgacgataattttgatgttggagagttgaag
cgaatgattgaagccatctaa
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