KEGG   Caenorhabditis elegans (nematode): CELE_Y53C12B.1
Entry
CELE_Y53C12B.1    CDS       T00019                                 
Symbol
Y53C12B.1
Name
(RefSeq) U3 small nucleolar RNA-associated protein 13 C-terminal domain-containing protein
  KO
K14555  U3 small nucleolar RNA-associated protein 13
Organism
cel  Caenorhabditis elegans (nematode)
Pathway
cel03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cel00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    CELE_Y53C12B.1 (Y53C12B.1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cel03009]
    CELE_Y53C12B.1 (Y53C12B.1)
Ribosome biogenesis [BR:cel03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    CELE_Y53C12B.1 (Y53C12B.1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Utp13 WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_IFT140_1st ANAPC4_WD40 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_DCAF4 NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_Nup120_160 UTP15_C VPS11_N WDR54 USP47_C Beta-prop_WDR11_1st B-prop_COPA_B_2nd
Other DBs
NCBI-GeneID: 190203
NCBI-ProteinID: NP_496100
WormBase: WBGene00013143
Ensembl: WBGene00013143
UniProt: O18215
LinkDB
Position
II:complement(9742982..9746078)
AA seq 793 aa
MTEPIKEIAAKRSVEAVYTGGTVRWSANGQKLFSTCTNVVKVIDLADNTASYTIGDPEDE
LRITCTAVDKNRNRLLVAYNNQIIREYSIPLDPSTTKPELARTWKTIHTAPILVMEFNEE
GHLLATGSADHIVKVWNLTEQQCTHTLKGPSVVSAILFGKHEKLVVGYIEGQLNLYNIMR
GAPKKLVNTWKSHNSHITALLQVPDSRVVVALSRDQTMSIHETETQETLRVLPLYESIEG
GAIGHNGNLFTVGEEGVVKEFVIETAKLVRKKRIASSNLDHLAYDVVSNRFLAISAEQNL
IILDFENLKIARQIVGFHDEIYSCCLLGKDESHMAVASNTSEIRLYNTKTLDCQLIRGHT
ESVLSVVSPTWDTSLLASCSKDNSIIFWRLVTSPENDSCSTLVPVAAATGHANTVTALAI
SNTGRAPFLASVSTDCTIKLWGLGVSTKLKEVKIDAEKDFVEQLPKLTCSSTMVAHGKDV
NCVDISESDALIATGGMDKLVKLWQVDTHKMQLGIAGTLSGHRRGVGDVKFAKNSHKLAS
CSGDMTIKIWNISEKSCLQTISGHSCAVFRVIFARNDSQLISADSAGIIKIWTIKTADCE
CSIDAHTDKIWSLSKNHNESEFVTAGTDGRIVVWKDVTEEKQKAEDNKRREAIEQDQTLT
NLLSQKRYSEALVFALTLAKPFCAFKVINALMAEETPEELGSAIRRLDTRQIEILLQFTV
KWNTNSRTSSVAQRVLYEIVHIVDPEELVSMPGAYGYIESFLPYTQRHMDRLDRAKQDVS
LFDFVWRQMRSSV
NT seq 2382 nt   +upstreamnt  +downstreamnt
atgactgaacctatcaaggaaattgccgcgaaaagaagtgtcgaagcagtttacaccgga
ggaactgtcagatggagtgcaaatggtcagaaacttttttctacatgcacaaatgttgtg
aaagtgattgatctggctgacaatactgcaagctataccatcggcgaccctgaagatgag
ctacgcattacgtgcacagctgtcgacaagaacagaaatcgccttttggtcgcctataac
aatcaaataattcgtgaatactcaattcctttggatccgtcgacaactaaaccagagttg
gccagaacatggaaaaccatacacactgctcctattctcgttatggaattcaatgaggag
ggccatttactggcgactggaagtgccgatcacatcgtgaaagtctggaatctgacagag
caacaatgtacacacacattaaaaggaccctcggtagtttcagcaattctgttcggaaaa
catgaaaagcttgtcgttggatacattgaaggacaattgaacctctataatataatgaga
ggtgctccgaaaaaacttgtaaacacatggaaaagtcataattctcatattaccgcactg
cttcaagttccggattcacgagttgttgtggctctttcgcgagatcagacgatgagtatt
catgaaacagaaactcaagaaacactccgagttcttccactctacgaatcaattgaaggc
ggagcaatcggacataacggaaatcttttcactgttggagaagagggtgttgttaaggaa
tttgtgattgaaactgcgaagttggtcagaaagaaaaggattgccagctcgaatctcgat
cacttggcctacgatgttgtttctaatcgctttttggcaatttccgccgaacaaaatctt
ataattttggattttgaaaatctgaaaattgcaagacaaattgttggattccatgacgaa
atctattcgtgctgtcttcttggaaaagatgaatctcacatggctgtcgcttccaatact
tctgaaatccgactctacaacactaaaaccctggattgtcaattaattcgtggtcacaca
gaatcagttctttccgtagtatctcctacctgggacacatctctactggcatcatgttct
aaagataattcgattatcttttggagacttgtaacatctcctgaaaatgactcttgctcc
actctggtcccagttgcggcagctacaggacatgcaaatacagtaactgctctagcgatt
tccaataccggacgagctcctttcctggcatcagtatcaacggattgtactatcaaattg
tggggattgggagtttctacaaaactaaaagaagtcaaaattgatgcagaaaaagatttt
gtcgaacagctcccaaaactgacatgcagttcaacaatggttgcacatggaaaagatgtg
aattgtgttgatatttccgaatcggatgctcttattgccactggaggaatggataaacta
gtaaaattatggcaagtggatactcacaaaatgcaattgggaatcgctggaactctatca
ggacatcgtcgtggagttggagatgttaaatttgcaaagaattctcacaaacttgcatct
tgcagtggagatatgaccattaaaatctggaacatctcggaaaaatcttgtcttcaaacc
atttccggacattcttgtgctgtattccgagtgatattcgctcgcaacgattctcagttg
atctctgcagacagtgctggaatcatcaagatttggacaatcaaaactgctgattgtgaa
tgttccattgatgcgcatactgacaaaatttggtcgctttcgaaaaatcataacgagtca
gagtttgtgactgctggaactgatgggcggattgttgtctggaaggatgttacagaggag
aaacaaaaagccgaggataataagagaagagaggctattgaacaagatcagactttgaca
aatttattgagtcagaagagatattcggaagctctcgtgtttgcactgactctagccaaa
ccgttttgtgcttttaaggttataaatgctctgatggctgaggagacaccagaagaactc
ggttccgcaattcgccgccttgacacccgtcaaattgagattctactgcaattcacagtg
aaatggaacacgaatagtcgaacatcgtcagttgcacaacgagttttgtacgaaattgtt
catatcgtggatccagaggagttagtgtcaatgcccggtgcatatggatatattgaatca
ttcctaccgtacacccaacggcacatggatcgattggatcgggcaaagcaagatgttagc
ctattcgattttgtttggagacaaatgagaagctctgtctga

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