Caenorhabditis elegans (nematode): CELE_Y54E10BR.6
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Entry
CELE_Y54E10BR.6 CDS
T00019
Symbol
rpb-7
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03020
RNA polymerase
cel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CELE_Y54E10BR.6 (rpb-7)
09124 Replication and repair
03420 Nucleotide excision repair
CELE_Y54E10BR.6 (rpb-7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cel03021
]
CELE_Y54E10BR.6 (rpb-7)
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y54E10BR.6 (rpb-7)
03400 DNA repair and recombination proteins [BR:
cel03400
]
CELE_Y54E10BR.6 (rpb-7)
Transcription machinery [BR:
cel03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
CELE_Y54E10BR.6 (rpb-7)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CELE_Y54E10BR.6 (rpb-7)
DNA repair and recombination proteins [BR:
cel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CELE_Y54E10BR.6 (rpb-7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHS2_Rpb7-N
S1
Motif
Other DBs
NCBI-GeneID:
171877
NCBI-ProteinID:
NP_491093
WormBase:
WBGene00021845
Ensembl:
WBGene00021845
UniProt:
Q9N3C9
LinkDB
All DBs
Position
I:complement(<3031338..>3032938)
Genome browser
AA seq
197 aa
AA seq
DB search
MRQGRLLAHSSSRWHATGALTLRMFFHLSLDHEVCLHPKYFGPNLNETIKMKLFNEVEGT
CTGKYGFVIAVTTIDTIGHGLIQPGRGFVIYPVRYKAIVFRPFKGQVVDGVVTQVNKVGI
FCDIGPLSCFISRHCIPPDMEFDPNSEKPCYKTNDEANVIRNDDEIRVKLIGTRVDANDI
FAIGTLMDDFLGLCQAE
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atgcgccaaggacgcctgctggcgcattcttcgtctcgttggcacgcaactggtgcgctt
acgcttcgtatgttcttccacttgtcactcgaccatgaagtctgcctccatccgaaatat
ttcggtccaaacctgaacgaaaccatcaaaatgaagctgttcaacgaagtcgagggaacg
tgcacaggaaagtacggattcgtcatcgcagtcaccacaatcgacacgatcggccacggc
ctgatccagcctggccgtggattcgtcatctacccggtccgttacaaggccatcgtgttc
cgcccgttcaaaggacaagtcgtcgatggagtcgtcacacaggtcaataaagtcggcatt
ttctgtgatatcggaccactttcatgcttcatcagtcgtcattgtattccaccagacatg
gaattcgatccgaacagtgagaaaccgtgctacaagaccaatgatgaggcgaatgtgatt
cggaatgatgatgagatccgtgtgaagctcatcggaacacgtgtcgatgctaacgacatt
tttgccatcggaaccttgatggacgattttctcggactgtgccaagcggaatga
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