Entry |
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Symbol |
laf-1
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Name |
(RefSeq) ATP-dependent RNA helicase laf-1
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KO |
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Organism |
cel Caenorhabditis elegans (nematode)
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Brite |
KEGG Orthology (KO) [BR:cel00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:cel03019]
CELE_Y71H2AM.19 (laf-1)
03041 Spliceosome [BR:cel03041]
CELE_Y71H2AM.19 (laf-1)
03036 Chromosome and associated proteins [BR:cel03036]
CELE_Y71H2AM.19 (laf-1)
Enzymes [BR:cel01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CELE_Y71H2AM.19 (laf-1)
Messenger RNA biogenesis [BR:cel03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
CELE_Y71H2AM.19 (laf-1)
mRNA cycle factors
Common to processing body (P body) and stress granule
CELE_Y71H2AM.19 (laf-1)
Spliceosome [BR:cel03041]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
CELE_Y71H2AM.19 (laf-1)
Chromosome and associated proteins [BR:cel03036]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
CELE_Y71H2AM.19 (laf-1)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
III:complement(2769356..2779053)
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AA seq |
708 aa
MESNQSNNGGSGNAALNRGGRYVPPHLRGGDGGAAAAASAGGDDRRGGAGGGGYRRGGGN
SGGGGGGGYDRGYNDNRDDRDNRGGSGGYGRDRNYEDRGYNGGGGGGGNRGYNNNRGGGG
GGYNRQDRGDGGSSNFSRGGYNNRDEGSDNRGSGRSYNNDRRDNGGDGQNTRWNNLDAPP
SRGTSKWENRGARDERIEQELFSGQLSGINFDKYEEIPVEATGDDVPQPISLFSDLSLHE
WIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDA
VHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQI
HKLRLGCHILIATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRM
PSKEERITAMFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRS
YLMDLLDATGDSSLTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRT
GTAPILVATAVAARGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKN
RNIARELMDLIVEANQELPDWLEGMSGDMRSGGGYRGRGGRGNGQRFGGRDHRYQGGSGN
GGGGNGGGGGFGGGGQRSGGGGGFQSGGGGGRQQQQQQRAQPQQDWWS |
NT seq |
2127 nt +upstreamnt +downstreamnt
atggaaagtaaccaatcgaacaatggaggcagtggtaatgctgcattaaatagaggagga
cgttatgtaccaccacatcttcgcggaggagatggtggagctgctgctgctgcttctgca
ggaggtgatgatcgccgcggtggagctggaggcggtggataccgtcgtggaggtggaaac
agtggcggcggcggtggcggaggatatgatcgcggatacaatgacaatcgtgacgatcgt
gacaaccgtggaggaagtggtggttatggaagagatcgtaactacgaggatcgtggttac
aacggcggtggaggtggaggtggaaaccgtggatacaataataatcgcgggggcggtggc
ggaggatataaccgtcaggatagaggtgatggtggatcatcaaacttctcaagaggagga
tataataaccgtgatgaaggttctgataacagaggatccggtagatcatacaataatgat
cgtcgggataatggaggcgatggccaaaacactcgctggaacaatctcgacgcgccacca
agcagaggcacatcaaaatgggagaatcgtggagcccgcgatgagcgtatcgagcaggag
ctcttctccggacagctttccggcattaatttcgacaaatacgaggagattccagttgaa
gcgaccggtgacgatgttccacagccaatcagcctcttctcggatctcagccttcacgaa
tggatcgaagagaatattaaaaccgccggatacgatcggccgacacctgttcagaaatat
tccattccagcattgcagggaggtcgtgacttgatgtcatgtgctcagactggatctgga
aaaactgcggctttcctggttccactggttaatgctattcttcaagatggtcctgatgct
gttcatcgttctgttacaagttctggtggaagaaagaagcagtatccaagtgctcttgtg
ctctcaccgactcgtgagctttcccttcagatcttcaacgagtctcgaaaattcgcctac
cgtaccccaatcacatcagcacttctttacggaggacgcgaaaactacaaggatcaaatt
cacaagcttcgactcggttgtcacattctgatcgcgactccaggtcgtctaatcgatgta
atggatcaaggattaattggaatggaaggatgccgttatttagtgctcgacgaggctgat
cgtatgcttgatatgggtttcgagccacaaatccgtcaaatagtcgaatgtaatcgtatg
ccatcaaaagaagaacgtattactgcaatgttctcagctacattcccaaaagaaattcaa
cttctcgctcaggatttcttgaaagaaaattatgttttcttggctgttggacgtgtcgga
tcaacatctgagaatattatgcaaaagattgtttgggttgaagaagacgaaaaaaggtcg
tatttaatggatcttcttgatgcaactggtgacagttctctaactcttgtattcgttgag
acgaagcgtggagcttctgatttggcatactatttgaatcgtcaaaactatgaagttgtc
actattcatggagatttgaagcaatttgagagagagaaacatttggatctttttagaacc
ggaacagctccaattcttgtcgcaaccgcagtggccgctcgtggtctggatatacctaat
gtgaagcacgtcatcaattatgatctaccatccgacgttgacgagtatgttcaccgtatc
ggacgtaccggacgtgtcggaaacgtcggccttgccacctcgttcttcaacgataaaaat
cgaaatatcgctcgcgagctgatggatttgattgttgaagccaatcaagagttgccggat
tggcttgaaggaatgtctggagatatgagaagtggaggcggataccgtggacgtggtgga
cgtggaaatggacaacgcttcggaggtcgcgatcaccgttatcaaggtggaagtggaaac
ggcggaggcggcaacggaggcggcggtggcttcggaggcggtggacaacgttccggtgga
ggcggtggattccagtcaggcggtggtggaggtcgccaacagcaacaacagcaacgtgct
cagcctcaacaggattggtggagttaa |