Caenorhabditis elegans (nematode): CELE_Y73B6BL.18
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Entry
CELE_Y73B6BL.18 CDS
T00019
Symbol
smg-3
Name
(RefSeq) MIF4G domain-containing protein
KO
K14327
regulator of nonsense transcripts 2
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03013
Nucleocytoplasmic transport
cel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CELE_Y73B6BL.18 (smg-3)
03015 mRNA surveillance pathway
CELE_Y73B6BL.18 (smg-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cel03019
]
CELE_Y73B6BL.18 (smg-3)
Messenger RNA biogenesis [BR:
cel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CELE_Y73B6BL.18 (smg-3)
mRNA cycle factors
P-body specific factors
CELE_Y73B6BL.18 (smg-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF421
DUF1319
Motif
Other DBs
NCBI-GeneID:
177397
NCBI-ProteinID:
NP_001368064
WormBase:
WBGene00004881
Ensembl:
WBGene00004881
UniProt:
C2BR97
LinkDB
All DBs
Position
IV:complement(6362395..>6373089)
Genome browser
AA seq
1144 aa
AA seq
DB search
MRRKVETSWLEELKKRVKYQETSRLQMVEIRETLLDNEKELRSLDSTLKKTTSFMKKVKL
LSAATVPQLIEELSKLNLSKFVEEMASGIIETKLKLSDIPKVTELCLAISAKYSNFSEQM
AGEFKKVLPVKKSDKIANVAKLRVDIIFLAELCLCGVFNEKEGLQVLGAVLSYLIQTDKT
DFVNVGLLATVSRTVGWQIANIVPIPMDDAETVEIQDEELPESSALSVEQKKSIRELFKS
YYDSLYSKTEKTCSARNKAMKRVKRQERSRGDAGDEEKTTLNDLQSELDSLRKMAIEISS
AIGVEMKPLKEEASDDEEDEAANLEMGRKLAEGAIKLWSDEETKAFYEDLIDLRQMVPKD
LYKESEQRTLSKAKMAERIEDVDMENINESGAMDAKRSSLQRGESEKETTPEDSQLQALL
KEAVDASEERGVSKWQSFVLDLDHLVSKYSTDQAAIYFVSNLNNKGCRKRLVKLMIDPPP
SRIDVVPFYARLVATLENVMPDLTTEIVTQLLEKFRGFLQQKPSSATAIIKVESKMVCVM
MIAELMKFGVISRAEGLSCLRQLVYDLRGHSVEMTATFMESSGLYLYRHTESHAKMKRLL
EVVKAKRERMKDQRQAMLIDNAYFTCLPPEDSKEERLRLKLDEEDTPMKRFIRHIILDIN
ESTVDVFLKCLRRLEWYDPEVADYAIRYLSSTWLLPIENLQHVASAIAGLCNLVHLQWIG
MAVIDSTIETIRISLENPGVYNQWAHSAAVYLAELYSFELCDEDLVLKILYQLISYPEPE
NSWRDLHRIRMICAMLEILREFFMKGSGKIKMRYFLSYFHRYYYIKKDAWDQEVAEQQPN
SGGETGENQNPLDVQTSFPYEVELAYTELCRQFRQKKSNSLRWPKNLKEAQDIVTKIEKK
FKGELKEFAGEHKDIEGDGLNELNVIEEDDEEDEDENRDSELDEDDSEEDRQKIENFSNA
VTKEEDDEFQRELDRMMGEGFRQSAFQMPVAAAQYDVTLPAAVKDRFNRSIKFAETVKDE
PAASSSKQDNDDDEDVYEKSPTIAASGRQKQTRVTLMVRGKTNKPSLKTVNIDDDQLQER
WKEEKAREEQERADMKRLTLGQHRRIEMEEEKALLASLNSSRKGNAKRGQFRPQFPKPHL
EGEW
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgaaaagtcgagacatcatggctggaagagctgaaaaagcgtgtaaaatatcaa
gaaacaagtcgtcttcaaatggtcgagattcgagaaactttgctcgataacgaaaaagaa
ttgcgaagtttagattcaacattgaaaaagacgacgagttttatgaaaaaagtgaagctt
ctcagtgcggccactgttccacaattaattgaagaattatcgaaattgaatttaagcaaa
tttgttgaggaaatggcgtcgggaattatagagacaaaattgaagttatccgatattccg
aaagtaacagagctctgccttgcaatttctgcgaaatattcaaacttcagtgaacagatg
gctggggaattcaaaaaagttcttcctgttaaaaagagtgacaaaattgcaaatgttgca
aaattgagagtggatattatcttcctcgctgaactttgcctgtgtggagttttcaatgaa
aaggaaggacttcaagttctcggtgctgtattaagttatttgattcaaacagataagact
gattttgtcaatgttggattattggctacagtatctagaactgttggatggcaaattgca
aatattgtgccaattccaatggatgatgctgaaacggtcgagattcaagacgaagaactc
cctgagtcatcagctctctcagttgaacagaaaaagtcgattcgtgagctcttcaaatca
tactacgattcactttattcgaaaaccgagaaaacgtgttcggcaagaaataaggcgatg
aagagagttaaacgacaggaaagaagccgtggagacgctggtgatgaggaaaagacaact
ttgaatgatcttcagtctgaattggattctctgcggaaaatggctatagagatatcgtct
gcaatcggtgtggaaatgaaaccgctaaaagaggaagctagtgacgatgaagaggatgaa
gctgccaacttggagatgggacgcaaacttgcagaaggagcaatcaagctgtggagtgat
gaagagacgaaggcattctacgaggatcttatcgatcttcgacagatggttcccaaggat
ctttataaagaatctgaacagagaactctcagcaaagcgaagatggctgaaaggattgaa
gatgtcgatatggaaaatatcaatgaatccggagcaatggatgcgaagagatcatcatta
caacgtggagagtctgaaaaggagacgacaccagaagattctcaacttcaagctcttctc
aaagaagctgtggatgcatccgaagaacgaggagtcagcaaatggcaaagttttgtactt
gatttggatcatcttgtcagcaagtactcaactgaccaagcagctatttattttgtttcg
aatctgaataataagggttgtcgcaagaggcttgtgaagcttatgatcgatccacctccg
tctcggatcgatgttgttccattttatgcccgacttgtcgctactctcgagaatgtgatg
cctgatttgacaactgaaatcgtaactcaactactcgagaaattccgcggatttttgcaa
cagaaaccatcgtcagctactgctataatcaaagtggaatcaaagatggtttgcgtgatg
atgatagctgaactgatgaagtttggagtaatttctcgtgctgaaggactcagttgtttg
agacaacttgtgtatgatttacgtggacattctgtagaaatgacagcgacattcatggaa
tctagtggtctttatctgtatagacatactgaatcacatgcaaaaatgaagagattattg
gaagttgtgaaggcgaaacgagaacgaatgaaagatcaaagacaagcgatgctcatagac
aatgcgtatttcacctgccttccaccagaagattcaaaagaagaacgtcttcgtttgaag
ctagacgaagaggatactccaatgaaacgatttattcgtcacataattctggatatcaat
gaatcaaccgttgatgttttcttaaaatgtcttcggaggcttgaatggtatgatccagaa
gttgctgattatgcaattcgttatctctcctccacgtggcttcttcccattgaaaatctt
caacacgtggcatctgcgattgctggtctctgtaatttggtacatcttcaatggattgga
atggctgtaattgattcaacaattgaaactattcgaatatccttggaaaatcctggagtc
tacaatcaatgggctcattctgccgccgtttatcttgcagagctctacagttttgagctg
tgtgatgaagatctagtcttgaagattctctatcaactgatttcatatccagaaccagaa
aattcgtggcgagacctgcaccgaattcgaatgatttgtgctatgctggaaattctacgc
gagttcttcatgaaaggctcgggaaaaatcaaaatgcgatatttcctatcatatttccat
cgttactattacatcaaaaaagatgcctgggatcaagaagttgccgaacaacaaccgaat
tcgggaggagaaacgggagaaaatcaaaatcctctcgatgttcagacaagtttcccgtat
gaagtcgaacttgcgtatactgaattgtgccgtcaattccgccaaaagaagtccaattcg
cttcgatggccgaaaaatttgaaagaagctcaagatatagtcacaaaaattgagaagaaa
ttcaagggagagttgaaagagtttgccggagaacacaaagacattgaaggtgatggtttg
aatgaactgaatgttattgaagaagatgatgaagaagacgaagatgagaatcgagactct
gaactggatgaagatgattctgaagaagatcgacagaaaattgagaatttctcgaatgcc
gtgacaaaagaagaagatgacgagttccagagagaactcgatcgaatgatgggagaagga
ttcagacaatcagcgtttcagatgcctgtagctgctgctcaatacgatgtcactctacca
gctgctgtaaaagatcggttcaatagaagtatcaagtttgctgaaactgtaaaagacgag
ccagcggcttcaagctctaagcaagataacgacgatgatgaggatgtctatgagaaatct
cccacaatcgcagcttctggacgtcaaaagcaaactcgtgtcacgctgatggtccgcgga
aaaacgaacaaaccatcgttaaagactgtcaacatcgacgatgatcagcttcaggaacgt
tggaaagaagaaaaagctcgcgaagagcaggaacgtgccgatatgaaacgattgactctt
ggacaacatcgtagaattgagatggaagaggagaaagccttgttggcatcgttgaacagt
tctcgaaagggaaatgctaagagaggtcaattccgtccacaattcccgaaacctcacctc
gaaggagaatggtga
DBGET
integrated database retrieval system
