Caenorhabditis elegans (nematode): CELE_ZK1098.1
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Entry
CELE_ZK1098.1 CDS
T00019
Symbol
prp-40
Name
(RefSeq) WW domain-containing protein ZK1098.1
KO
K12821
pre-mRNA-processing factor 40
Organism
cel
Caenorhabditis elegans (nematode)
Pathway
cel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CELE_ZK1098.1 (prp-40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cel03041
]
CELE_ZK1098.1 (prp-40)
Spliceosome [BR:
cel03041
]
Complex A
U1 snRNP components
U1 related factors
CELE_ZK1098.1 (prp-40)
Complex B
CELE_ZK1098.1 (prp-40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
176343
NCBI-ProteinID:
NP_001255005
WormBase:
WBGene00014218
Ensembl:
WBGene00014218
UniProt:
P34600
LinkDB
All DBs
Position
III:<9522075..>9525454
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AA seq
724 aa
AA seq
DB search
MLPNGFSFLNPNLVAAANIQQVLLNQRFGMPPVGSIAQVPLLQMPTHSVVAPHVAAPTRP
SPMLVPPGMGIDESHSSPSVESDWSVHTNEKGTPYYHNRVTKQTSWIKPDVLKTPLERST
SGQPQQGQWKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQKPAAKAATVDTVALAA
AVQQKKAESDLDKAMKATLASMPNVPLPSEKKEEESVNDEVELKKRQSERFRELLRDKYN
DGKITTNCNWDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKE
DLEKFLQEHPKMKESLKYQKASDIFSKEPLWIAVNDEDRKEIFRDCIDFVARRDKEKKEE
DRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVFEDHI
KQAEKEHDEEKEQEEKRLRRQQRKVREEYRLLLESLHKRGELTSMSLWTSLFPIISTDTR
FELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRLIKEILTEKGCQVIATTEYREFSDWVVS
HEKGGKVDHGNMKLCYNSLIEKAESKAKDEEKESLRRKRRLESEFRNLLKEHNVDKDSEW
TVIKPKIEKDKAYLAMENDDERETAFNHYKNGTSGTTAGSEILEKKKKKKDKKKKNKRSD
NNSESEGEIREKEKKKKKKHSKEDRMDDEERGKKSKKSRKRSPSRSESPRHSSEKRKRRE
SEAD
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccaatggattttcatttcttaatcccaatttagtagcggctgctaacattcaa
caagttctcctgaaccaaagatttggcatgccaccagttggatctatcgctcaagttccg
ctcctccaaatgcccacccactctgtagttgctccgcacgttgcagctccgacgaggcct
tcaccaatgctggtacctcctggaatgggcatagacgaatcccactcatccccatctgtc
gaatctgattggagtgtgcatacgaatgaaaagggtacaccttattatcataatcgtgta
acgaaacaaacgtcatggataaaaccagacgtcttaaaaactccactcgagagaagtact
agcggacagccacaacaaggtcaatggaaagaattcatgagtgatgacggaaaaccatat
tattataatacccttacaaagaaaacgcaatgggttaaaccagatggagaggaaattaca
aaaggagaacagaagccagcagcaaaggctgcaactgtggacactgtcgcattggcagcg
gctgttcagcaaaagaaggcggaatccgatctagacaaagccatgaaggctaccctcgca
tcaatgccaaatgtacctcttccgtctgaaaagaaagaagaagaatctgtgaacgatgaa
gttgaattgaagaaacggcagtcagaacgattccgtgaactgctccgtgacaaatataat
gacggaaagataacaacgaattgcaattgggatcaggctgtaaaatggatccagaatgat
cctcgtttcagaattctgaacaaagtctcagaaaagaaacaattatttaacgcttggaaa
gttcaaagaggaaaagaagaaagagatgaaaaacgactggcaatcaaaaagtctaaagaa
gatttggaaaaattcttgcaagagcatccaaaaatgaaagaaagcctcaaataccaaaaa
gccagcgatatattcagcaaggagccactttggattgctgttaatgatgaggatagaaaa
gagatttttagagattgtattgatttcgtggctcgtagggacaaggagaaaaaagaagag
gacagaaaacgagacattgcagctttcagtcacgttcttcagagtatggagcaaataact
tacaaaactacatgggctcaagcacaacgaattttatatgaaaatcctcagttcgcggag
agaaaggatctgcattttatggacaaggaagatgcgctcacagttttcgaagatcatata
aaacaagccgagaaagagcacgacgaggagaaagagcaagaagagaaacgactccgcagg
caacaacgaaaagtacgagaagaatatcgtttactgctggagagcttgcataagagggga
gaactcacttccatgtcactttggacttccctgtttcctattatctcaacagacactcga
tttgaacttatgctattccaacctggatcgtctccacttgatcttttcaagttttttgtt
gaagatctcaaggagcaatataccgaagaccgccgtctcattaaagaaattttaacagag
aaagggtgtcaggtgatagcaacaaccgagtacagggaattttctgattgggttgtttct
catgagaaaggaggaaaagttgatcatggaaacatgaaactttgttacaactcactgatt
gaaaaagctgaaagcaaggcgaaggatgaggaaaaagagtcgctgagaaggaaaagaaga
ctggagagcgaattcagaaatctactgaaagagcataatgtcgataaagattccgaatgg
actgtaatcaagccaaagattgaaaaagataaggcttatcttgccatggagaatgacgat
gaacgagagactgcatttaatcattataaaaacggaacaagtggaactactgctggaagc
gaaattttggaaaagaagaaaaagaaaaaggataaaaagaagaagaataagagaagcgat
aataactcggagtcggaaggagaaatccgcgaaaaagagaagaaaaagaaaaagaagcat
tcaaaggaagacagaatggacgatgaagagagaggaaaaaagtcgaaaaaatcccgaaaa
cgtagtccctccaggagtgaatccccacgtcattcgtctgaaaaacggaaaagacgagaa
tcagaagctgattaa
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