Caenorhabditis elegans (nematode): CELE_ZK512.2
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Entry
CELE_ZK512.2 CDS
T00019
Symbol
ZK512.2
Name
(RefSeq) putative ATP-dependent RNA helicase DDX55 homolog
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cel
Caenorhabditis elegans (nematode)
Brite
KEGG Orthology (KO) [BR:
cel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cel03009
]
CELE_ZK512.2 (ZK512.2)
Enzymes [BR:
cel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CELE_ZK512.2 (ZK512.2)
Ribosome biogenesis [BR:
cel03009
]
Eukaryotic type
Pre-60S particles
Helicases
CELE_ZK512.2 (ZK512.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Helicase_C_2
Cas3-like_C_2
SNF2-rel_dom
SecA_DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
176292
NCBI-ProteinID:
NP_001254980
WormBase:
WBGene00013983
Ensembl:
WBGene00013983
UniProt:
P34640
LinkDB
All DBs
Position
III:complement(<9141749..>9144794)
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AA seq
578 aa
AA seq
DB search
MTSKVGPVALKTFREKLGPELLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKT
LAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKV
DKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEADRFNEIQFEDHM
REILSCIPKQRRTGLFSATQVKEEDDLMVFGLRNAKQVKVAQERNSAAPSTLKNYYVECR
ADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGKRPLFAVHGKCSNPHRAS
QIKAFSDSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNAL
ILIASEQLAYVNFLDNHEKVKLDEIKVPTNNSRKSEELRQKMIKIQVSDRAILEAGTRAF
VSHVESYAKHDCHLICSLDDLNVVGLANSYALLRLPKMRELSQRKDLDMFDRSAIETSEI
KYADVKLEANRETVMKEKHEKKVETLAAKDKKRREKEARKLKKMGGRFRNGGGTGRKAEE
KKALKRKAEEEDDAQNDIRLLKRIKRGKLSKKEIKDVL
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaaaagtgggtccagtagccttgaaaacgttccgcgagaagctcggcccggaa
ctgctcgaagtattcgataaaagttacaaatcgttcacagatgtacaagttctctctgga
acacatctccttaacctgtctgatgttgtcgttgaatctccaactggatctggaaagact
cttgctttcgttttaccaatgatgagaatgattcaaaatgcaaaacttcagcctgctgac
attggagcacttattctatcgccttcaagagagctctgcagtcaaatcgttagcgtaatt
caaccattcgcagagaaactcaatttaactgtggaaacagttactggaggacagaaagtg
gacaaaaatatcaagatgttcaagaataaaaatgtcaacattcttgtcgccactcccgga
cgtcttttccaaataattcaacacgagaagacccttattgctcgaaaaatgagaactctt
caactcctcgtcattgatgaagcggatagatttaatgaaattcagtttgaggatcatatg
cgagagattctctcatgtatcccaaagcaacgtcgtaccggattgttctctgctactcag
gttaaggaagaagatgatttgatggtttttggtttgcgtaacgcaaagcaagtgaaagtg
gctcaagagaggaactcggccgcaccttcaacgttgaagaattattatgtcgaatgtcga
gctgatgagaaaacgagtgtctgtttggagtttattcgccagagaacggataaaaagatt
cttatcttctttccttcgtgcaattcagttagatatttttacaagatttttgaaagatgt
cttggtaaacgcccattgttcgcagttcatggaaaatgctcaaacccacaccgtgcatct
caaatcaaagcattctcggatagcaccaatggagttatgatttcaactgatgtgatggca
cgaggaattgatatctcggatattgactgggtcattcagttcgatcttccaaaacattcc
agttggtttgtccatcgagccggccgaacagccagatgtggtcgtgaaggaaatgctctt
attctcatcgcttcggaacagttggcctatgtgaatttccttgataaccacgagaaagta
aagcttgatgagatcaaagttccaactaacaattcgagaaaatcggaagagctgagacag
aaaatgatcaaaattcaagtttctgatcgtgcaattctagaagctggaactcgtgcattt
gtgagtcacgtggagtcatatgccaaacacgattgtcatctcatttgctcacttgatgat
ctcaacgtggtcggtcttgccaattcgtacgctcttctcagattgccgaaaatgcgtgaa
ctgtcacaaagaaaagatttggatatgttcgacagaagtgccatcgagacatctgaaatc
aaatacgccgatgttaaactagaagccaatcgggaaactgtgatgaaagaaaagcacgag
aagaaggtcgagacgttggctgcaaaggataagaagcgccgtgagaaggaggctagaaaa
ctgaagaagatgggtggaaggttcagaaatggtggtggaactggtagaaaagcagaggag
aagaaggctttgaagagaaaggccgaagaagaagatgatgctcaaaatgatatccgattg
ttgaagagaatcaagagaggaaagttgagcaagaaggaaatcaaggatgttctttaa
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