Cellulomonas sp. ATA003: REH70_15560
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Entry
REH70_15560 CDS
T10451
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cela Cellulomonas sp. ATA003
Pathway
cela03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cela00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
REH70_15560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cela03400
]
REH70_15560 (mfd)
Enzymes [BR:
cela01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
REH70_15560 (mfd)
DNA repair and recombination proteins [BR:
cela03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
REH70_15560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WNB85068
LinkDB
All DBs
Position
complement(3116912..3120628)
Genome browser
AA seq
1238 aa
AA seq
DB search
MNLSGLLPALLADAAAAEAVSLVRGRGAVDVVASAGARPPLLAAMAGARAHDGDAHAGDA
HDGGAHAGDAPAAPSSAMSTRPLVVVTATGRDADDLAGSLRCYLPADDVAVLPAWETLPH
ERLSPRSDTVARRLAVFRRLAHPADAAGHTGPIRVLVMPVRALLQPVVAGLGELEPVELN
VGDTADLEAIAERLSGAAYARVDMVERRGEFAVRGGILDVFPPTEDHPLRVEFWGDQVEE
VRWFAVADQRSLEVADHGVWAPPCREILLTDDVRKRAADLAEQLPGAAEMLDRLAQGIAV
EGMESLAPVLVESMVPVLDLVAEEALLVVADPERVRRRAHDLVATTEEFLAAAWTSAAAG
GQTPLDLRAASFASFADVRRIAARRGLGWWTLSAFGMAPTDAADDDAAATVGAVRHTDDD
EPTTLTVAARDVEGYRGDLERAITDVRSLQRDGWRLVLTTEGHGPARRMVEQLGAADVPA
RLVGEITADPEGGVVLVTPAPVGPGFVAPDLHLAVFSESDLTGRAGSSTRDMRKMPSRRR
NVVDPLQLRTGDFVVHEQHGVGKFVELVQRTLGAGANAATREYMVIEYASSKRGQPGDRL
YVPTDQLDQVTKYSGGESPSLNKMGGGDWAKTKGRARKAIKEIAAELIRLYSARMATPGH
AFGPDTPWQRELEDAFAYVETPDQLATIEEVKADMEKSVPMDRLVCGDVGYGKTEIAIRA
AFKAVQDGKQVAVLVPTTLLVQQHLDTFTERYAPFPVTVRSLSRFQTDAEAKEVVAGLAD
GSVDVVIGTHRLITGEVRFKDLGLVIVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPR
TLEMAVTGIREMSTLATPPEERHPVLTFVGAYDEKQITAAVRRELLREGQVFYVHNKVES
IERTAARLHELVPEARIAVAHGKMNEHTLEQVIADFWEKKFDVLVCTTIVETGLDISNAN
TLILERADVLGLSQLHQLRGRVGRGRERAYAYFLYPPERPLTETAHDRLATMAAHTDLGS
GIQIAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVASFRGDAEPDVPEVTIEL
PVDAHIPHDYIAHERLRLEAYRKIAVADSVDAIAGVRAELVDRYGPVPDVVENLFAVAGF
RNTARAAGLADVTAQGKFVRLAPVELPESAQMRLKRLYPGTVLKPALRTILVPFPTTARI
GGKPLHGADVLAWASQLIDAVIVGDVSAAAAVGTAARA
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaacctctccggtctgctccccgccctcctcgccgacgccgccgcggccgaggcggtc
tcgctcgtccgcggccgcggcgcggtcgacgtcgtcgcctcggccggcgcccgtccgccg
ctgctcgccgcgatggccggcgcccgggcgcacgacggcgacgcgcacgccggcgacgcg
cacgacggcggcgcgcacgccggcgacgcgcccgccgcgccgtcgtcggccatgtccacg
cgcccgctcgtcgtggtgaccgcgaccggccgggacgcggacgacctcgccggctcgctg
cgctgctacctgcccgccgacgacgtcgcggtcctgccggcctgggagacgctgccgcac
gagcggctgtccccgcgcagcgacaccgtcgcccggcggctcgccgtcttccgccgcctc
gcgcaccccgccgacgcggccgggcacaccgggccgatccgcgtcctcgtcatgccggtg
cgtgcgctgctgcagcccgtcgtcgcggggctcggcgagctcgagccggtcgagctcaac
gtcggcgacaccgcggacctcgaggccatcgccgagcggttgtccggcgccgcctacgca
cgcgtggacatggtcgagcggcgcggggagttcgccgtgcgcggcggcatcctcgacgtg
ttcccgcccaccgaggaccacccgctgcgggtggagttctggggcgaccaggtcgaggag
gtgcgctggttcgccgtcgccgaccagcggtcgctcgaggtcgccgaccacggcgtgtgg
gcgccgccgtgccgggagatcctcctcaccgacgacgtgcggaagcgggcagcagacctc
gccgagcagctgccgggtgcggcggagatgctcgaccgcctcgcgcagggcatcgccgtc
gagggcatggagtccctcgcgcccgtgctggtcgagtcgatggtgccggtcctggacctc
gtcgccgaggaggcgctcctggtcgtggccgaccccgagcgcgtgcgccgccgcgcgcac
gacctcgtcgcgaccaccgaggagttcctcgccgccgcgtggacgtccgccgccgccggc
gggcagaccccgctggacctgcgggcggcgtcgttcgccagcttcgcggacgtccggcgc
atcgccgcccgacgcgggctggggtggtggacgctcagcgccttcggcatggcccccacc
gacgccgccgacgacgacgccgcggcgacggtcggcgccgtccggcacaccgacgacgac
gagcccaccacgctgaccgtcgccgcgcgggacgtcgaggggtaccgcggcgacctggag
cgcgcgatcacggatgtgcgttccctccagcgcgacggctggcggctcgtgctcaccacg
gagggccacgggccggcgcgtcgcatggtcgagcagctcggcgccgccgacgtgcccgcg
cgcctcgtcggcgagatcaccgccgaccccgagggcggcgtcgtcctggtgaccccggcg
cccgtcggccccggcttcgtcgcccccgacctgcacctcgcggtgttctccgagtccgac
ctgaccggtcgcgcggggtcgtccacgcgggacatgcggaagatgccgtcgcgccgtcgc
aacgtcgtcgacccgctgcagctgcgcaccggcgacttcgtcgtccacgagcagcacggc
gtcgggaagttcgtcgagctcgtgcagcgcacgctcggcgccggagccaacgccgccacc
cgcgagtacatggtcatcgagtacgcgtcctccaagcgcgggcagcccggcgaccggctg
tacgtgcccaccgaccagctcgaccaggtcacgaagtactccggtggcgagtcgccgtcc
ctgaacaagatgggcggcggggactgggccaagaccaagggccgcgcccgcaaggcgatc
aaggagatcgccgccgagctcatccgcctgtactccgcccgcatggccaccccgggccac
gccttcgggccggacaccccgtggcagcgcgagctcgaggacgccttcgcctacgtcgag
acgccggaccagctcgccacgatcgaggaggtcaaggcggacatggagaagtcggtcccg
atggaccggctcgtgtgcggcgacgtcggctacggcaagaccgagatcgcgatccgggcc
gcgttcaaggcggtgcaggacggcaagcaggtcgccgtcctggtccccacgacgctcctc
gtccagcagcacctcgacacgttcaccgagcggtacgcgccgttcccggtcaccgtgcgg
tcgctgtcccgcttccagaccgacgccgaggccaaggaggtcgtcgccggtctcgccgac
ggctcggtcgacgtcgtcatcggcacgcaccgcctcatcaccggggaggtccggttcaag
gacctcggcctggtcatcgtcgacgaggagcagcggttcggcgtcgagcacaaggagacg
ctcaagcagctgcgcaccaacgtcgacgtgctcgcgatgagcgcgacgccgatcccgcgc
accctggagatggcggtcaccggcatccgggagatgtcgacgctggccaccccgccggag
gagcgccacccggtgctgacgttcgtcggcgcgtacgacgagaagcagatcaccgccgcg
gtccggcgcgagctgctgcgcgagggccaggtcttctacgtccacaacaaggtcgagtcg
atcgagcgcaccgcggcccggctgcacgagctggtgcccgaggcccggatcgccgtcgcg
cacgggaagatgaacgagcacacgctcgagcaggtcatcgcggacttctgggagaagaag
ttcgacgtcctcgtctgcacgacgatcgtcgagaccgggctggacatctccaacgccaac
accctgatcctcgagcgcgccgacgtgctgggcctgtcccagctgcaccagctgcgcggg
cgggtcgggcgcgggcgtgagcgcgcgtacgcctacttcctgtacccgccggagcggccg
ctgaccgagacggcgcacgaccggctcgcgacgatggccgcgcacaccgacctgggctcg
ggcatccagatcgccatgaaggacctcgagatccgcggcgcgggtaacctgctcggcggt
gagcagtccgggcacatcgcgggcgtcgggttcgacctctacatccggatggtgggggag
gcggtcgcgtccttccgtggcgacgccgaaccggacgtccccgaggtcaccatcgagctg
ccggtcgacgcgcacatcccgcacgactacatcgcccacgagcggctgcggctcgaggcg
taccgcaagatcgcggtggcggactccgtcgacgcgatcgccggggtgcgggccgagctc
gtggaccggtacggccccgtgccggacgtcgtcgagaacctcttcgcggtcgcggggttc
cgcaacaccgcgcgcgccgcgggcctggccgacgtcaccgcgcagggcaagttcgtccgg
ctcgcgccggtcgagctccccgagtcggcccagatgcggctcaagcgcctctacccgggg
accgtcctcaagccggcgctgcgcacgatcctcgtgccgttcccgacgacggcgcgcatc
ggcggcaagccgctgcacggggcggacgtgctggcctgggcgagccagctcatcgacgcg
gtcatcgtcggcgacgtctcggccgcggcggccgtcgggaccgcggcgcgggcctag
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