Cellulomonas sp. ES6: P9841_16305
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Entry
P9841_16305 CDS
T10432
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cele Cellulomonas sp. ES6
Pathway
cele03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cele00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
P9841_16305 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cele03400
]
P9841_16305 (ligD)
Enzymes [BR:
cele01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
P9841_16305 (ligD)
DNA repair and recombination proteins [BR:
cele03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
P9841_16305 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Rv0299_toxin
Motif
Other DBs
NCBI-ProteinID:
WHP17126
LinkDB
All DBs
Position
3501194..3502945
Genome browser
AA seq
583 aa
AA seq
DB search
MPGRRRDRGRPRDAGARDEGARDEGAPDGAARDEGARDAAARDEGARDGGARGLETYRSM
RDFGRTPEPAGAPGDAGAGRPGARRFVVQRHRARRLHYDLRFEIDGVLVSWAVPRGPTLD
PDVRRMAVHVEDHPLEYEDFEGVIPSGEYGGGDVVVWDRGTWEPHGTDDPGAAVAAGELH
ADVNGEKLRGRLVLVRRAAAGEDGKEQWLLVHKHDDHAVRGWDAEDHPRSVVSGRTNDEV
KADPDRLWRSDLPAAEASVDLRPPDVAPPTPDELARLDDLGPAGGTWPVFGRRLRVTNLD
KVLFPARDGQEPVTKRELLRYTARIAPVALPYLRGRALNMHRYPQGAGSSGFWHKELPGH
APDWLPRWRNPGADPGETATYLVVDEPAALVWAANFGALEWHAWTSRTDAPHRPTYALVD
IDPGPSTAWEDVLLLARLHRDAFEHLGVRAYPKVTGQRGIQVWVPITPGPTFDETRAWVE
RVSRTVGAVVPELVSWRWEVKARGGQTRLDYTQNAVNKTLVAPYSPRARPGAPVSAPITW
DELDEPWLRPDAFTVRTVLDRVQERGDPFRGLLQGGQTLPRLG
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggtcgacgacgcgatcgtgggcgcccgcgcgacgccggcgcccgggacgagggt
gcgcgggacgagggtgcgcccgacggggctgcgcgggacgagggtgcgcgggatgcggct
gcgcgggacgagggtgcgcgcgacggcggagcccgcggcctcgagacctaccggtcgatg
cgggacttcgggcgcacgcccgagccggcgggggcgcccggcgacgccggtgcgggacgg
ccgggggcgcggcggttcgtcgtccagcggcaccgtgcccggcggctgcactacgacctg
cggttcgagatcgacggcgtcctcgtgtcgtgggcggtcccgcgcggcccgacgctcgac
ccggacgtccgccgcatggccgtgcacgtggaggaccacccgctggagtacgaggacttc
gagggcgtcatcccctccggggagtacggcggcggcgacgtcgtcgtctgggaccgcggg
acgtgggagccgcacggcacggacgacccgggcgcggcggtcgccgccggggagctgcac
gccgacgtcaacggcgagaagctgcgcgggcggctggtgctcgtgcgccgcgcagccgcc
ggcgaggacggcaaggagcagtggctgctcgtccacaagcacgacgaccacgcggtccgg
ggctgggacgcggaggaccacccgcgctccgtggtgagcgggcgcacgaacgacgaggtg
aaggccgacccggaccggctgtggcgctccgacctgcccgctgccgaggcgtccgtcgac
ctgcgcccgcccgacgtcgcgccgccgacgccggacgagctcgcccggctggacgacctc
ggtcccgccggcggcacgtggccggtgttcgggcggcggctgcgggtgaccaacctcgac
aaggtgctgttcccggcgcgggacgggcaggagccggtgaccaagcgcgagctcctgcgc
tacaccgcccgcatcgcgccggtcgcgctgccgtacctgcggggccgggccctgaacatg
caccgctacccgcagggcgccggcagcagcgggttctggcacaaggagctgccggggcac
gcccccgactggctcccgcgctggcgcaaccccggcgccgaccccggggagaccgcgacg
tacctcgtggtggacgagccggccgccctggtgtgggcggccaacttcggcgcgctcgag
tggcacgcgtggacctcccgcaccgacgcgccgcaccggccgacgtacgcgctggtcgac
atcgaccccggcccgtcgaccgcgtgggaggacgtgctgctgctcgcgcgcctgcaccgc
gacgcgttcgagcacctcggcgtccgcgcctacccgaaggtcaccgggcagcgcggcatc
caggtgtgggtgccgatcacgcccgggcccacgttcgacgagacccgggcgtgggtcgag
cgcgtgtcccggacggtcggagccgtcgtgcccgagctcgtgtcctggcgctgggaggtg
aaggcccgcggcggtcagacgcggctcgactacacgcagaacgccgtcaacaagaccctc
gtggctccgtacagcccgcgggcgcggccaggggcgccggtgtccgcgccgatcacgtgg
gacgagctggacgagccctggttgcggccggacgcgttcaccgtgcggaccgtgctcgac
cgggtgcaggagcggggcgacccgttccgcgggctgctgcagggcgggcagacgctgccg
cgcctgggttga
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