Cellvibrio sp. PSBB006: CBR65_02065
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Entry
CBR65_02065 CDS
T04891
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cell
Cellvibrio sp. PSBB006
Pathway
cell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR65_02065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cell03019
]
CBR65_02065
03009 Ribosome biogenesis [BR:
cell03009
]
CBR65_02065
Enzymes [BR:
cell01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CBR65_02065
Messenger RNA biogenesis [BR:
cell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBR65_02065
Ribosome biogenesis [BR:
cell03009
]
Prokaryotic type
rRNA processing factors
CBR65_02065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
ARU26314
LinkDB
All DBs
Position
complement(456722..459658)
Genome browser
AA seq
978 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRNREQKKSNIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFSKNTGDSDGRVKIKEVLKEGTEVIVQIDKEERGNKGAALTTF
VSLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGSIEVPQGMGVIIRTAGVGRSADE
LQWDLNYLLQLWGSIDSEAKKSPAPTFLFQESNVIIRAIRDYLRQDVGEVIVDNKEAFEL
ASAFIQQVMPNYRSKVKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGAIVIDVTEALV
SIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMQPVRNQREVE
NRMRDALLMDRARVQIGRISRFGLLEMSRQRLRPSLGEIHSKVCPRCNGQGTIRGTRSLA
LAILRLVEEEAQKERSAEIRAIAPMSVATYLLNEKRKTISNIEARNNTRVVIVPSADMMT
PHFEVQRLRDDDEGTLETSYKITPSADESKEEDEEMNVKALPVNRPAVQVTAPSQPAPEP
VKKPGVIARFISLLLGLFSGEKSDRSSKGHKHDRNRQGRNRNQPQSRHRRDRNRRDKDRK
DDRELRDNRAPRESSDTPTSDTRNTNERGNRENERRENRQQPRDTRDNSDAPKERDNKDK
DGGDNRNQRGNRNNRDDRDNSRRNQASNDVTAEVKSDNIEAEQDSDERPAKRPAGRRARS
QQRRRGRRETQEDNAQNAGAVESISANDSVAANETESSMEFISDENANLNTQVSEAIAEQ
TAAFGQTSPNTMEHQEEVEVVTTSTQSFVIDQEPVTTFAEESVVTTEESHITEAPSVSQV
FEAPLPEAAPLPKKETVAVAVTTESVVIEQEQTDQPVAPEIIETTETIAETEMAKETPDN
ATSNGEIVRASNDPRRAPKPAAVHIVTETLTRVQPRALDTSMPANVEHNPRPLTRPSNDP
RLAKRVAQATDAKTEDQE
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcatcaatgcaactcaacccgaagagttgcgcgtagctctggtcgat
ggccaatggctttatgacctcgacatcgaaaatcgcaaccgcgaacaaaagaaatccaac
atctataaaggccgtatcactcgggtagaaccgagcctggaagcagcctttgtcgactat
ggtgccgagcgccatggtttcctccccctgaaagaaatctcccgtgagtacttcagtaaa
aatactggtgatagcgatgggcgcgtaaagatcaaggaagtgctcaaagagggtaccgag
gtcattgtccagattgataaggaagagcgcggcaataaaggcgctgcgctcacgaccttt
gtcagcctcgccggccgttacctggtattaatgccaaacaatccgcgcgccggcggcatc
tcccgtcgcatagaaggtgaggatcgggcagaacttaaagatgccctcggttctattgaa
gtgccgcaaggtatgggcgtcatcattcgcactgccggcgtaggccgtagcgctgacgaa
ctgcaatgggatttgaattatttgctgcaattatggggctccatcgacagcgaagccaag
aagtcccctgccccaaccttcctgttccaggaaagcaacgtcatcattcgggctattcgc
gactacttacgtcaggacgttggtgaagtcattgttgataataaagaagccttcgaattg
gcctcggcctttattcagcaagtgatgcccaactaccgcagcaaggtaaagctgtatcag
gatgatattcccttatttaaccgctaccagattgaaagccagatcgaaaccgccttccaa
cgcgaggtgaaactcccctctggtggcgccattgtgatcgacgttaccgaagcgctggtc
tcgatcgacattaactcctcgcgcgcgaccaaaggtggcgatatcgaagagaccgcactg
caaaccaatctggaagctgcagacgagattgcgcggcaattgcgtttgcgcgacatgggc
ggcctgattgtcatcgactttattgatatgcagccagtgcgcaaccaacgcgaagtagaa
aaccgtatgcgcgatgctcttttgatggatcgtgcacgcgtacaaatcgggcgtatttca
cgcttcggattgctggagatgtcccgtcaacgtctgcgcccctccctgggagagattcat
tccaaggtgtgcccacgctgtaacggacaaggcaccatccgcggcactcgctcattggca
ctggctatattgcgcctggtggaagaggaggctcagaaagagcgtagcgctgaaattcgc
gcgattgcgcctatgtctgtggccacttatttgctgaatgaaaaacgcaaaaccatctcc
aatattgaagcgcgcaacaacacgcgggtagtcattgttccgagcgcggatatgatgaca
cctcattttgaagtgcaacgtctccgtgacgatgacgaagggacactggaaaccagttac
aaaatcacgccaagcgctgatgagagcaaagaagaagacgaagaaatgaacgtaaaggca
ctgccagttaacaggcctgccgttcaagttaccgcgccatcacaaccagcgcctgagccg
gtaaaaaaacctggcgtcattgcacggtttatcagcttgctactgggtctgttcagcggc
gagaaatccgaccgcagcagcaaaggccacaagcacgatcgtaatcgccagggtcgcaac
aggaatcagccacaatcgcgtcatcgtcgcgatcgaaatcgtcgcgataaagatcggaaa
gatgatcgggaacttcgcgataaccgtgcaccgcgtgaatcaagcgatacacccacgagc
gatacacgcaatactaatgagcgcggcaatcgtgaaaatgagcgccgtgaaaatcgccaa
caaccgcgcgatacacgcgacaatagcgacgcccccaaagaaagagacaacaaggataaa
gacggcggcgataatcgcaaccaacgcggcaatcgcaacaatcgtgatgatcgggacaac
tcccgccgcaaccaagcgagcaacgacgttaccgcagaagtcaaaagtgacaacattgaa
gctgaacaagacagcgatgaacgtccagcaaaacgtcccgctggaagacgtgcccgctca
caacagcgccgccggggtcgccgtgagacacaggaagataatgcacaaaacgcaggtgca
gttgaatccatcagcgcaaacgactcagttgctgccaatgaaactgaatccagtatggag
ttcatctctgatgaaaacgcaaatctgaacactcaggtttctgaagcgattgccgagcaa
acagctgcttttggtcaaaccagccccaacaccatggagcaccaagaagaagtggaagtg
gtaactacctccacgcaatcgttcgtcatcgaccaggagccagtgacaacttttgctgaa
gaatctgtagtaactacagaagaaagtcacataacagaagcaccttccgtttcacaggtt
tttgaagcgccactacccgaagctgcgcccttacccaaaaaagaaactgtggctgtagcg
gttacaacagaaagcgttgtcattgaacaagaacagacggaccaacctgttgcaccagag
attattgaaaccaccgaaacaattgctgaaacggaaatggctaaagaaactcctgacaat
gcaacatccaacggagaaattgttcgtgccagtaatgatccgcgtcgagcaccaaaaccg
gcagcagttcatatcgtgacagaaacattgacacgggttcagccgcgcgcattggatacc
agcatgccagcaaatgtggagcacaatcctcgcccgctgacgcgaccatccaacgatccc
cgtcttgcaaaacgcgtagcgcaagctactgatgcaaagactgaagatcaggaataa
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