Cellvibrio sp. PSBB006: CBR65_02360
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Entry
CBR65_02360 CDS
T04891
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cell
Cellvibrio sp. PSBB006
Pathway
cell03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cell00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBR65_02360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cell03019
]
CBR65_02360
03009 Ribosome biogenesis [BR:
cell03009
]
CBR65_02360
Enzymes [BR:
cell01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBR65_02360
Messenger RNA biogenesis [BR:
cell03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBR65_02360
Ribosome biogenesis [BR:
cell03009
]
Prokaryotic type
rRNA helicases
CBR65_02360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ARU26368
LinkDB
All DBs
Position
complement(516135..517970)
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AA seq
611 aa
AA seq
DB search
MSSNILFADLDLSENVQKAIQKVGYEQPSPIQLAAIPILLAGGDIIGMAQTGTGKTAAFA
LPLLSRIDIKQADPQILVLAPTRELAIQVAEAFQKYASEIPGFHVLPIYGGQDMSSQLRQ
LKRGAHVVVGTPGRVMDHLRRGSLNLNNLKSLVLDEADEMLRMGFIDDVEWILEHTPKTR
QTALFSATMPREIRRVANSYLNEPQEISIQSSTSTGDNIEQVYWMVSGTNKLDALTRILE
VEPFDGMIIFVRTKTATVELAEKLEARGYSASALNGDMNQQLRERTIERLKSGKLDIVIA
TDVAARGIDVERVSHVVNYDIPYDSEAYVHRIGRTGRAGRTGKAILFVAPREKRLLYTIE
KATRKPITLMELPSGATVTRHRIDQFTQQITTTLTEQTDLSFFNDLLAEYSHKHDVSPEE
IASALAFLLQKERPLQVKFTDVKPDRSPREDRERAPRGDRSERGERSERGGRERREHGND
ENMQRYRIEVGRNHEARPGDIVGAIANEAGISSSNIGHIKLFDEFSTVDLPKGLAQDVLN
QLKKVRVRNRPLEISVDQGGQGKRESGEKRSFSDRPKRDSDAPRGKLSLGAKPKVRDRDQ
KNKGYRGKKSD
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaacattttatttgccgatctcgacctctctgaaaacgttcaaaaagctatt
caaaaagtgggctacgaacagccatcacctatccagttggccgccattcccatcctcctg
gccggtggcgatattattggtatggcacagacaggtaccggtaaaactgcagccttcgcg
ctgccgctcttgtcacgcatcgatatcaaacaagccgacccacaaattcttgtgctagcg
cctacacgcgaactggccattcaggtggcggaagcattccagaaatatgccagcgaaatt
cccggattccatgtactgcccatttatggcggccaggacatgagcagccaattgcgccag
ctcaaacgcggcgcgcacgttgtcgtaggcacacccggccgcgttatggatcacctgcgt
cgcggcagtttgaatttaaataatctgaaaagcctggtgctcgacgaagctgacgaaatg
ctgcgcatgggctttattgatgatgttgaatggattttggaacatacgcccaaaaccagg
caaaccgctcttttctccgccaccatgccgcgtgagattcgccgcgtagccaacagctat
ctaaacgagccccaggaaatcagcatccagagtagtacatcgactggcgataacattgag
caagtatattggatggtcagcggcaccaataaattggatgcgttaacacgtattcttgaa
gttgaacctttcgacggcatgattatttttgtgcgcaccaaaaccgctaccgtcgagctg
gccgaaaaactggaagcgcgcggttattctgcatcagcacttaacggcgacatgaaccag
caattacgtgaacgcaccattgaacgtttgaagtccggcaaactggacattgttattgca
acggatgtcgctgcacgcggtattgacgtggagcgtgtaagccacgtggtgaactacgat
atcccctatgacagtgaagcctatgtgcaccgtatcggtcgtaccggtcgcgctggtcgt
accggtaaggctattttgtttgtggcaccgcgtgaaaaacgtttgctatacaccatcgaa
aaagcaacccgcaagccgattacgctgatggaattacccagcggcgctacggttacccgc
catcgtatcgatcagtttacccagcaaattacaaccacgctgactgaacaaacggatttg
tctttctttaacgatctgttggctgaatacagccacaagcatgatgtatcaccggaagaa
atcgcttccgccctggcgttcctgttacaaaaagaacgcccgttgcaagtgaaatttacc
gatgtgaaacccgatcgcagtccgcgtgaagatcgcgaacgcgctccgcgtggtgatcgt
agtgagcgtggtgagagaagcgaacgcggtggccgtgaacgccgtgaacacggcaatgac
gaaaacatgcaacgttatcgcattgaagtgggccgcaaccatgaagcacgccccggtgat
atcgtcggcgcgattgccaatgaagccggcatttccagcagcaacatcggccacattaaa
ttgttcgatgagttctccaccgttgacttaccgaaaggtttagcgcaggacgtgttaaat
caattgaagaaagtcagagtgcgcaatcgtccgctggagattagcgttgaccaaggtggt
caaggcaagcgcgaatcaggcgaaaaacgtagtttttctgatcgccctaagcgtgatagc
gatgcaccgcgcggcaaactcagcctgggcgccaaacccaaggtgcgtgatcgggatcag
aaaaataaaggctatcgcgggaaaaaatcggattaa
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