Cellvibrio sp. PSBB006: CBR65_05475
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Entry
CBR65_05475 CDS
T04891
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cell
Cellvibrio sp. PSBB006
Brite
KEGG Orthology (KO) [BR:
cell00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cell03016
]
CBR65_05475
Enzymes [BR:
cell01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBR65_05475
Transfer RNA biogenesis [BR:
cell03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CBR65_05475
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rrp44_S1
MerR_2
Motif
Other DBs
NCBI-ProteinID:
ARU29958
UniProt:
A0A1Y0G2Z7
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Position
1328527..1330572
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AA seq
681 aa
AA seq
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MLNKDALQQLSQLKNTIREQRQVYQGVVRATPKRFGFVKLDDGREAFLDPEQMQRVLPDD
RVEVELKTNDKNQLDARLEKLISSSLREFVGRYVCKGNGHFVEPDLPQFNRWLFIPPQER
NKCIEGDLIQCAVIKHPFNNEGKAQVRVIQRIGRPEEPGIESRYILAKYQLPEQWTSEAQ
SQATSINWAPFTREPQQQDLTHLPFVTIDSETTRDMDDAVYIEPKNDGWIVYTAIADPTR
HITPDSPLEKAARERASTVYLLGQTITMLPTELSHDTYSLVPEKERPTLVCRMQVNSQGS
ITRYEFIEAVICSRNKLSYQSVYELLAPADAVESSTDIPADTQHMLQELHKFALARIQYR
AEHALVMEERADYFYILNEQKKIERVEKRDRNIAHRVVEEAMLATNICAGELFLQHPGYG
IFSSHVGFRAERLEDALSLIKEDRPDFEPGDLTRLENFQRLFKDLRLNPEHQDKNAPLLA
ILQRLLQAGALSFDPVGHFGLGFPAYATVTSPIRRYNDLFNHFAIKRILSNQPPLNLDDK
LTEQLQEQLSKGRQACRQIELWLICQFMTQHIGSVHSGTITQVNSVGVGVRLEDLGVEGF
VILADKDNNIKTSLDARRFCLTAGDKTYRLDQPVSVMVADVDIEKRRIGLTLVSDAIAER
LSVWNDLPPSPDQPASQEEQP
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgctcaataaagatgccctgcaacagctttcccagctaaaaaataccatccgtgaacag
cgccaggtttatcaaggtgttgtacgtgccacacccaagcgcttcgggtttgtcaaactg
gatgacggacgggaagcattccttgatcccgaacaaatgcagcgtgtcttaccggatgat
cgcgttgaagtcgagcttaaaaccaacgataaaaatcagttggatgcgcgtctggaaaaa
cttatcagcagttcgttgcgcgagtttgtgggtcgatacgtttgcaagggaaacggccat
tttgttgagccggatttaccccagtttaatcgctggttatttattcccccccaggaacga
aacaaatgcatcgaaggtgatttgattcaatgcgcggtcatcaagcatccatttaacaat
gaaggtaaagcgcaagttcgtgttatccagcgcattggcagaccggaagagccaggcata
gaaagtcgctacattctcgccaaatatcaattacccgagcaatggaccagtgaagcacaa
agccaggctacttccatcaattgggcaccgtttacccgcgagccgcaacagcaagacctg
acacatctgcccttcgtgaccattgattcagaaaccacgcgggatatggatgatgcggtg
tatatcgagcccaaaaatgatggctggatcgtgtacaccgcaatcgccgatcccacgcgt
cacataacgcctgacagccccctggaaaaagctgcccgcgagcgcgccagcacggtgtac
ctgctcggtcaaacgattaccatgctgcccaccgaactttctcatgacacctattcactg
gtgccggaaaaagagcggcccaccctggtttgtcgcatgcaggttaatagtcagggttcg
attacccgttatgaatttattgaagctgttatttgttcgcggaataagctcagctatcaa
agtgtttacgaattactcgcgcccgcagatgcagtggaatcttcaaccgacatacctgcg
gatacgcagcacatgttgcaggagttgcataaatttgccctggcgcgcattcaataccgt
gcagaacacgcgttggtcatggaagagcgagccgattatttttatatcctcaacgaacag
aaaaaaattgagcgtgttgaaaaaagggatcgcaacattgcacaccgtgttgtagaggaa
gccatgctggcgaccaatatctgcgcgggggaattatttttacaacatccgggttacggc
attttttccagccacgtcggcttccgcgccgagcgtctggaggatgcgctgagcttgatc
aaagaggataggccagacttcgagccaggcgatttaacccgcctggaaaattttcagcga
ttgttcaaagacctgcgcctcaaccctgaacatcaggataaaaacgcccccctattggcg
atactgcaacggttattacaagctggcgcactttctttcgatcccgtgggacatttcggt
ttgggctttcccgcttacgccaccgtgacatcaccaatccgccgctacaatgatctgttc
aatcatttcgccatcaaacgtattctgagtaaccaacctccgcttaaccttgatgacaag
ttaacagaacaattgcaggaacaattatccaaaggcaggcaggcttgtcgtcaaatcgag
ctatggttaatttgccaatttatgacgcagcatatcggtagcgtccatagcggcactatc
acccaggtcaactcggtgggtgtcggtgttcgtctggaagatttgggcgttgaagggttt
gttatcctggcggataaagacaacaacataaaaacgtcattggatgctcgccgcttttgt
ctcacagccggcgataaaacctatcgcctagatcagccagtttctgtcatggtagcagac
gtagatatagaaaagcggcgtattggcttgaccctggtcagcgatgctattgccgaacgt
ttaagcgtgtggaatgacctgcccccctcaccggaccagcccgcctcacaggaagagcaa
ccatga
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