Cellvibrio sp. PSBB006: CBR65_05905
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Entry
CBR65_05905 CDS
T04891
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cell
Cellvibrio sp. PSBB006
Pathway
cell03410
Base excision repair
cell03430
Mismatch repair
cell03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cell00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBR65_05905
03430 Mismatch repair
CBR65_05905
03440 Homologous recombination
CBR65_05905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cell03400
]
CBR65_05905
DNA repair and recombination proteins [BR:
cell03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CBR65_05905
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CBR65_05905
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CBR65_05905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
ARU27010
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Position
complement(1416776..1418506)
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AA seq
576 aa
AA seq
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MQKVIRRRDPIVSAGLNNQLPALLQRVYCARGVKQDEELQHHLTLLQKPSFKGLSEAVNL
LADAVVAQAKIMIVGDFDADGATSCALAVLALRAMGLPSVDFLVPNRFEYGYGLTPEIVT
VAAAQQPDLIITVDNGISSIEGVQAARELGIAVIVTDHHLPGSELPDADAIVNPNQPGCP
FPSKNLAGVGVIFYVMNALRAELRQLGWFAESGIPEPNMASFLDLVALGTVADVVPLDHN
NRILVAQGLQRMRAGVARPGILALLEVAGRTPHKLVAGDLGFIVGPRLNAAGRLDDMSLG
IQCLLCDSPSLAREMALSLDELNRDRKAIESGMQQEALHMLQKILVDDADSLPWGLCLFD
ENWHQGVIGILASRIKDRYHRPVIVFADAGEGQIKGSARSIPGLHIRDALDAVAAHHPGL
LKKFGGHAMAAGMSLAREDFAAFAQAFDEEVHRQLTEDDLKAVLVSDGELTPEDFNLVIA
AQLRDAGPWGQHFPEPLFDGEFFLVQQRIVGEKHLKMVLSHDAAGKQLLDAIAFNVDVQQ
WPNAAAKRVRLAYRLDINEFRGKQSVQLMVEYLELC
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaagtgattcgccgtcgcgaccccatcgtatcagctggcttgaacaaccaactg
cctgcactgttgcagcgggtttactgtgcgcgtggtgtcaaacaggatgaagagttacaa
caccacttgacactgttgcaaaaacccagtttcaaggggttgtccgaggcggttaattta
ttggctgatgctgtggtggcgcaggcaaaaattatgatcgtgggtgactttgatgcggac
ggtgcaaccagttgcgctctggctgtacttgcattgcgcgctatgggtttgccttcagtc
gattttctggtgccgaatcggtttgagtacggatatggattaacaccggaaattgtcacc
gtcgctgcggctcagcagccagacctcatcatcaccgttgataatggtatctccagtatt
gaaggcgtccaggcagcgcgcgagctgggcatcgcggttatcgtaactgatcaccatttg
ccgggcagcgaattacccgacgccgatgcgatcgtgaatcccaatcaaccgggttgtcca
tttcccagtaaaaatcttgctggtgtcggtgttattttttatgtcatgaacgcgttacgc
gcggaacttcgtcaacttggctggtttgccgagagcggcattcctgaaccgaacatggcc
agcttcctcgatctggttgctctggggacagtggcagatgtggtgccgctcgatcacaac
aatcgcattctggttgcgcaagggctacagcgtatgcgtgccggtgttgcgcgtcccggc
atcctggcgctacttgaagttgctggtcggaccccacacaagcttgtggctggcgacctg
ggttttattgttggtccacgcttgaatgcagcggggcgattggatgatatgtcgctcggc
attcagtgtttgttatgcgacagtccatcccttgctcgggaaatggcgttgtcactggat
gaattgaaccgtgaccgcaaagcgattgaaagtggcatgcaacaagaagcgttacacatg
ttgcaaaagatattggtggacgatgcagactctcttccctggggattatgcttattcgat
gaaaattggcaccaaggtgtgattggtattctggcttcgcgaattaaagatcgctaccac
cgtccggttattgtgtttgccgatgccggtgaaggacaaattaaaggttctgctcgttca
atccccggtttacatattcgcgatgcattagatgcagttgctgcgcatcaccccgggttg
ttaaaaaaattcggtggtcacgccatggcggcgggaatgagtttggcgcgggaagatttt
gcagcctttgcccaggcttttgatgaagaagtgcatcggcaattaacggaagacgatttg
aaagcggttctggtcagcgatggtgaactaacaccggaggattttaacctggtcatcgct
gcgcagctgcgcgacgccgggccttgggggcagcatttcccggaacctttattcgatgga
gaattctttttggtgcaacagcgcattgtgggagagaaacacttaaagatggtgctatcc
catgatgccgccggaaaacaattactggacgccattgcatttaatgttgatgtgcaacag
tggcccaatgcagcggcgaagcgtgtgcgattggcctatcgtttggatatcaatgaattt
cgcggtaagcaaagcgtccagttaatggtggaatatctggagctctgctag
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