Cellvibrio sp. PSBB006: CBR65_09130
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Entry
CBR65_09130 CDS
T04891
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cell
Cellvibrio sp. PSBB006
Pathway
cell03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cell00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CBR65_09130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cell03021
]
CBR65_09130
03400 DNA repair and recombination proteins [BR:
cell03400
]
CBR65_09130
Enzymes [BR:
cell01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CBR65_09130
Transcription machinery [BR:
cell03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CBR65_09130
DNA repair and recombination proteins [BR:
cell03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CBR65_09130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ARU27587
UniProt:
A0A1Y0FVZ3
LinkDB
All DBs
Position
complement(2202053..2206279)
Genome browser
AA seq
1408 aa
AA seq
DB search
MKDLLNLLKSQGQVEEFDAIRISLASPEMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTSLERGQLLTDEQYFEAMEEFGDEFEAKM
GAEAIQTLMRDIDLEGEIQHLREEIPNTTSETKIKKYSKRLKLLEAFHFSGNKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLELRGLATTIKAAKKMVEREEAVVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYWMTRERINARGEGMHFADTAEVSRAYYSK
QVDLQARIKVRLSETLIGAEGEKQQSTRLVDTTVGRVLLWEIVPAGIPLEMTNRPMVKKA
ISAVINYCYRVVGLKATVIFADRLMYMGYDFSTKSGSSIGVNDFAIPDAKADIIARAESE
VKEIEGQYAAGLVTQGEKYNKVIDIWSRANDLVAKSMMEGISKESVINREGKEEQQASFN
SVFMYADSGARGSPAQIRQLAGMRGLMARPDGSIIEQPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTMIDCGTDEGLTMSPVIEGGDVIESLGDRIL
GRVVARDVIRPGSDEILILAGTMIDEAWVERIEAMGIDEVCVRSPISCDARTGICSMCYG
RDLARGHRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSVQVKQEGTVRL
LNVKVVSNPAGNLVAVSRSGELAIADASGRERERYKIPYGALITVKDGETVKGGQIIAKW
DPHTHPIVSEVAGTVAFSGMEDGLSIRRQTDELTGLSSIEVLDPAERPSAGKDLRPAVTL
VDAKGKELFLANTNVPAHYMLPSKAILSINNSDIINVGDIIARIPQEGSKTRDITGGLPR
VADLFEARRPKEPSILAEISGTVSFGKETKGKRRLIITPTDGQLLPDGSTYYEVLIPKHR
QLTVFEGEMVEKGEVVSDGPANPHDILRLQGVEALSRYITNEIQDVYRLQGVKINDKHIE
TIVRQMLRKVEITTMGDSNFVKGEQVEYTQVLEENERLRGDGKQPGQFERLLLGITKASL
ATESFISAASFQETTRVLTEAAVTGKKDSLRGLKENVVVGRLIPAGTGLAYHSERKRKRE
AALNVSDVGVSAEDVEAALTEALKSSSN
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttactgaatttactcaagtcccagggacaagtcgaagagttcgatgctatc
cgcatcagcctggcgtcaccggagatgattcgctcctggtcatacggcgaagtgaaaaag
ccggaaaccattaactaccgtaccttcaagcctgagcgtgaaggtttgttctgtgccaag
atctttggtccggtaaaagattacgaatgcttgtgtggtaaatacaagcgcatgaagcat
cgcggcatcatctgtgagaaatgcggtgtagaagtgacgcttgccaaagtgcgtcgcgaa
cgtatgggtcatattgaattggccagcccggttgcacacatttggttcctcaaatcactg
ccgagccgtatcggtttgttgctcgacatgacgctgcgcgatattgagcgcgtactttac
ttcgaatcttatgttgttactgagccaggcatgaccagcctggagcgtggtcagttgtta
actgatgagcagtacttcgaggcgatggaagagtttggtgatgaattcgaagccaagatg
ggcgccgaagctattcagacgctaatgcgcgacattgatctggaaggtgagattcaacat
ttgcgggaagaaattcctaacaccaccagcgaaaccaaaattaagaaatattccaagcgc
ttgaagttgctggaggctttccacttttcaggtaacaagcctgagtggatggtgatggaa
gtgctgccggtgctgccgccggatctgcgtcctttggttccgttggatggtggtcgcttt
gcgacatccgacctcaatgacctttatcgtcgtgtcatcaaccgtaataatcgtttaaag
cgtttgcttgatttgaatgcgcccgacattatcgtgcgcaatgagaagcgcatgcttcag
gaagcggtagatgccttgctggataatggtcgtcgcggtcgagcgatcaccggctctaac
aagcgcccgctgaaatcattggcggatatgatcaaaggtaaacaaggtcgtttccgtcaa
aacctgctcggaaagcgcgtggactattccggtcgttcggtgatcgtggtaggtccgacg
ttgcgcttgcaccaatgcggtctgcccaagaagatggctttggagctgttcaagccgttt
atcttcagcaagctcgaactgcgtggcttggcgacgactattaaagccgccaagaaaatg
gttgagcgcgaagaggctgtagtatgggatattctggatgatgtgatccgtgaacacccg
gtgctgctgaaccgtgccccaacacttcaccgtctcggtatccaggcatttgagccagtg
ttgattgaaggtaaggcaatccagttgcatccgctggtttgtacagcatacaacgctgac
ttcgacggtgaccagatggccgtgcacgtgccgttgacactggaagcgcagttggaagcg
cgcgcgctgatgatgtctaccaacaacattctttctcccgcgtccggtgagccgatcatt
gtgccatcgcaggacgtggttctcggtctgtattggatgacgcgcgagcgtatcaatgcg
cggggtgagggaatgcactttgccgacacggctgaagtttcccgcgcttattactccaaa
caggtggacctccaagcgcgcattaaggtgcgtttgtccgaaaccctgatcggtgccgaa
ggagaaaaacaacaatcaacacgtctggttgacaccacggttggtcgtgtattgctgtgg
gaaattgttcccgctggcattccattggagatgaccaatcgcccgatggttaagaaggcg
atctcagcggtgatcaactactgctatcgcgtggtagggctcaaggctaccgttattttt
gctgaccgcttgatgtacatgggttacgacttctctaccaagtctggctcatctatcggt
gttaatgactttgctattcctgatgcgaaagccgacatcattgcgcgtgctgagagcgaa
gtgaaggaaattgaagggcaatatgctgcaggtctggtaacccagggcgaaaagtacaac
aaggttatcgatatctggtctcgtgcgaatgacctcgtggccaagtccatgatggaaggc
atcagtaaagaatcggtaataaaccgcgaaggtaaagaggagcaacaagcttcgtttaac
tccgtatttatgtatgcagattccggtgcgcggggctcgccagcacagattcgtcagtta
gcgggtatgcgtggcctgatggcgcgtccagatggttctattatcgagcagccgattacg
gcgaacttccgcgaaggcttgaacgtacttcagtactttatttctacccacggtgcgcgg
aaaggtttggcggataccgccttgaagacggcgaactccggttacctgacacgtcgtttg
gtggatgttgctcaggatctggttgtcaccatgatcgattgcggcactgacgaaggtttg
acaatgtcaccggttattgaaggtggcgatgttattgaatcattgggtgatcgtatcctc
ggtcgtgtggtggcgcgtgacgttattcgtcctggtagcgatgagattctgattcttgct
ggcaccatgattgatgaggcttgggttgagcgcatcgaagccatgggtattgacgaagtc
tgtgtgcgttcgccgatcagctgcgacgcgcgaaccggtatctgttcaatgtgttatggc
cgcgacctggctcgtgggcatcgtgttaacgttggtgaggctgtgggtgttattgcagca
caatccattggtgagccgggtacccagttgacgatgcgtaccttccacattggtggtgcg
gcgtcacgagcttctgctgctgatagtgtacaagtgaagcaggaaggtactgtccgcttg
ctgaacgtgaaggtggtgagcaatccggccggtaacctggtagcggtatcgcgctctggt
gaactggcaattgctgacgccagcggtcgtgagcgtgaacgctataagatcccctatggc
gctttgattaccgtgaaagacggtgaaaccgttaaaggtggtcagattatcgcgaaatgg
gatccgcacactcacccgatcgtttcggaagtggcgggtacggtagccttctctggtatg
gaagatggtttgtcaattcgccgtcaaacagacgaactgactggcttgagttccatcgaa
gttttagatccggctgaacgtccctctgctggtaaagatttaagaccagctgttaccttg
gttgatgccaagggtaaagagttattcctcgcgaataccaacgtgccggcgcactacatg
ctgccttccaaggcgattttgagcatcaacaacagcgacattatcaacgttggtgacatc
atcgcgcgtattccgcaggaaggttccaagactcgcgatattaccggtggtctgccgcgc
gttgctgacttgttcgaagcgcgccgtccgaaagagccgtcaatcctggcggaaatttca
ggtacagtgagctttggtaaagaaaccaagggcaaacgtcgtttgatcatcacgccgact
gacggtcaattgctaccggatggatcaacttattatgaagtgttgatccccaagcatcgc
cagttgacggtcttcgaaggtgagatggtagaaaagggagaggttgtatctgacggcccg
gctaacccgcacgatatcctccgtttgcaaggggtagaagccttgtctcgttacattacg
aatgagatccaggatgtttaccgcttgcagggtgtgaagattaacgacaagcacatcgaa
acaattgtgcgtcagatgctgcgcaaggttgagatcaccacgatgggcgactccaacttt
gtaaaaggcgagcaggttgaatacacccaggtgttggaagagaatgagcgcctgcgcggc
gatggcaaacagcctggccagttcgagcgcttattgctgggtattaccaaagcctctctg
gcgactgagtcctttatctccgctgcgtcattccaggaaaccacccgcgttcttaccgaa
gcggcggttaccggcaagaaagacagtctgcgcgggctgaaagaaaacgtcgttgttggt
cgtctgattcctgccggtactggcttggcatatcacagcgagcgtaagcgcaagcgtgaa
gcggcgctgaatgtgagtgatgttggcgtgagtgcggaagatgtcgaagcagcattgact
gaggcgttgaagtccagctccaactag
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integrated database retrieval system
