KEGG   Cellvibrio sp. PSBB006: CBR65_12585
Entry
CBR65_12585       CDS       T04891                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
cell  Cellvibrio sp. PSBB006
Pathway
cell03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:cell00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CBR65_12585
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cell03400]
    CBR65_12585
Enzymes [BR:cell01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CBR65_12585
DNA repair and recombination proteins [BR:cell03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CBR65_12585
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ARU28195
UniProt: A0A1Y0FYZ3
LinkDB
Position
complement(3025765..3028431)
AA seq 888 aa
MAKSTKNDSEYNRKRNFDMTSEPREDHAAREKKPSRQKRTNALRFVVQKHAARRLHYDFR
LELDGTLKSWAVPKGPSLDPKDKRLAVHVEDHPMAYASFEGSIPAGQYGAGDVIVWDQGV
WRSLDEDPTAAYAAGKLKFTLIGEKLSGDWNLVRTTMRASGDKEQWLLIKERDQAARRGE
DYNIVKEEPDSVLSSANIPGKPAGKSSASANKSASRSASKHTSSHNVRPIKAGQSLPEHL
APELATLVSEPLTGKWLYEVKFDGYRILARILDGEVRLFTRNDNDWTRRMPKQVQAIKEL
GLDNSWLDGEVVVLNDEGLPDFQALQRAFEIGRSHNIVYYVFDAPFLNGSDMRRLPVEER
RAALEGVLPGNNKGLVRFSTAFEDGHASILETACAMSLEGIIGKRLGSPYVSRRSADWIK
LKCRLRQEFVIVGYTPPQGSRSHFGALLLGVHKAVNDPELIYAGRVGTGFNATSLKDIHR
QLHPLERTDSPLSHSISSSEARDVHWLEPTLVCEVEFAEWTGDNRLRQASFIALRSDKPA
REIIREQPRTPGDVAGARSNAATKKHQTTKAKAGPHNDQDKPTKSNKKDSSTLAGVKITH
PERELDSESQTRKLDLAHFYDDISEWILPHLDNRPVSLLRLPTGLDGEQFFQKHSEHLAI
PAVKQLDAALDPGHARLMEIDSTAALVGAVQMGTIEFHTWGSTSDRIEKPDRIILDLDPD
PALPWKSMLDATRLTLAVLDELGLETFLKTSGGKGIHLIIPLARRDDWITIKEFAKAIAQ
FMARQLPDRFVARMGPKNRVGKIFVDYLRNQRGASTVAAYSVRARPGLPVSVPIARDELT
HLHSAAQWHIGNLRRRLAALKSDPWADYANQQRITRAMWKRLGVSPPE
NT seq 2667 nt   +upstreamnt  +downstreamnt
atggcgaaatccaccaagaacgacagcgagtacaatcgcaaacgcaatttcgatatgact
tctgagccgcgcgaagatcatgccgcgcgagaaaaaaaaccgtcgcgtcaaaagcgcacc
aatgcattgcgttttgtggtgcaaaaacacgcggcgcgtcgactgcattacgactttcgt
cttgagctggatggcacgcttaaaagttgggcggtgccgaaaggcccaagtctcgatccg
aaggacaaacgcctcgctgtgcatgtggaagaccatcccatggcttacgccagttttgag
ggcagtattccagcgggacaatacggcgcgggcgacgtcatcgtgtgggatcagggcgtc
tggcgttcgctcgacgaagatcccaccgccgcctatgcggcgggcaaactgaagtttacg
ttaattggtgaaaagctcagtggcgactggaatctagtacgcaccaccatgcgcgccagc
ggtgacaaggagcagtggttgttgatcaaggaacgcgaccaggcggcgcgacgtggggag
gattacaacatcgtcaaggaagagccggacagtgtgctcagttccgccaatatccctggg
aaacctgccggaaaatcctccgccagcgccaacaaaagcgcgagccggtcggccagtaaa
catacgtcctcacacaatgttcgacccatcaaggcgggccagtctctgccggaacatctg
gcgcctgagctggcgactctggttagcgaaccgctgaccgggaagtggctttacgaggtc
aagtttgatggttatcgcatcctggcgcgtattctcgatggggaggtgcgcctgttcacc
cgcaatgacaatgactggacccgccgaatgcccaaacaggtgcaggcgatcaaggaactg
gggctggataattcctggctcgatggggaagtggtggtgctcaatgatgaagggctgccg
gatttccaggcattgcagcgggccttcgagattggccgcagtcacaatattgtctactac
gtgtttgatgcgcccttcctcaatggcagcgacatgcgccgtttaccggtggaggaacgg
cgcgcggcgctggaaggtgtcctcccgggtaacaacaaaggcttggtgcgtttctccact
gcatttgaggacggccacgccagcattctggaaactgcctgcgccatgtcgctggagggc
attattggcaagcgcttgggcagcccttacgtgtcccggcgtagcgcggattggatcaag
ctgaaatgccgcctgcggcaggagtttgtgatcgtgggctacaccccgcctcaaggcagc
cgcagccattttggcgcgctcttactgggggtacacaaggcggtgaacgacccggaattg
atctacgccggtcgggtaggcaccggcttcaatgccaccagcctgaaggatatccaccgt
caattgcacccgctggagcgcactgattctcccttgagccacagcatctccagtagtgaa
gcacgcgatgtccattggctggagcctaccctggtgtgtgaagtggaatttgccgaatgg
accggcgataaccgtttgcgccaggcgtcgttcatcgccttgcgcagcgacaaaccggcg
agggagattattcgcgagcaaccgcgcacccccggtgatgtggccggtgcccgtagcaat
gcggcaacaaagaagcaccagactactaaggcaaaagccggaccgcacaacgaccaggat
aaacccacaaaatcgaacaaaaaggacagctccacgctggccggggtcaagattacccac
ccggaacgcgagcttgatagcgaaagtcagactcgcaagctcgaccttgcgcacttttat
gacgacatcagcgaatggattctgccgcatctggataatcgtccggtgtcgctgctgcgg
ttaccgacgggtctggacggcgagcagttcttccagaagcattccgagcacctagcgatc
ccggcggtaaagcagctcgatgcggccctcgaccccggccacgcgcggctgatggagatc
gacagtacggcagcgctggtgggcgcggtgcagatgggcaccatcgaattccacacctgg
ggttccaccagtgaccgtattgaaaagcccgaccgtatcatcctggatctggacccggac
ccggccttgccgtggaaaagcatgcttgatgccacgcgcctgacgctcgccgtgctcgat
gaactcgggctggaaactttcctgaagaccagcggcggcaaggggattcacctgattatt
cccctggcgcggcgcgatgactggatcaccatcaaggagtttgcgaaggcgattgcccag
tttatggcacgccagttgcctgatcgttttgtagcgcgtatgggcccgaaaaaccgggtc
ggcaagatctttgtggattacctgcgcaatcagcgcggcgccagtaccgtcgcggcctac
tcggtgcgtgcgcggccgggcctgccagtatcggtgcccatcgcgcgcgatgaattgacg
cacctgcacagtgccgcgcagtggcatatcggcaacctgcgtcggcgattagccgcactg
aaatctgacccgtgggcggactatgctaaccagcagcggattaccagggcgatgtggaaa
cgcctgggggtttcgccgcccgaataa

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