Cellulomonas sp. NTE-D12: CELD12_20900
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Entry
CELD12_20900 CDS
T10634
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
celn Cellulomonas sp. NTE-D12
Pathway
celn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
celn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CELD12_20900 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
celn03019
]
CELD12_20900 (rnj)
Messenger RNA biogenesis [BR:
celn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CELD12_20900 (rnj)
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Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BDO42600
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Position
complement(2276766..2278451)
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AA seq
561 aa
AA seq
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MSHPHPELTLPPALAAGALRIVPLGGLGEVGRNMSVLEFDGRLLVIDCGVLFPEDNQPGV
DLILPDFDYIRDRLDDIEAIVLTHGHEDHIGAVPYLLRLRQDIPLVGSQLTLAFVEAKLK
EHRITPLTLPVREGQTEQLGVFECEFVAVNHSIPDALAVAVRTPAGTVLNTGDFKMDQLP
LDGRITDLRAFARLGEQGVDLFMVDSTNAEVPGFVTGEREIGPVLDRVFAESTRRIIVAS
FASHVHRVQQVLDAAAMHERRVALVGRSMVRNMTIAAELGYLHVPEGVLVDQKQVDDLPD
DQVVFMCTGSQGEPMAALSRIANGDHRISVGPGDTVILASSLIPGNENAVFRVINGLTRL
GARVVHSGNAKVHVSGHASAGELLYVYNVLRPRNVMPIHGEVRHLVANAALAVRTGVPAD
RVVLAEDGVVVDLVDGRASVAGAVPCGYVYVDGSSVGGITEAELKDRRILGDEGFVSIFA
VVSSADGKVLAGPQIHARGVAEQDSVFDAVLPELSAALEEAARSSSVDTYQLQQVVRRVV
GRFVASRLRRRPMIIPVVVEA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccacccccaccccgaactcaccctgcccccggccctggcggccggcgcgctgcgc
atcgtcccgctcggcggcctcggtgaggtgggccgcaacatgtcggtcctcgagttcgac
ggtcgcctgctggtgatcgactgcggcgtgctgttccccgaggacaaccagcccggcgtc
gacctgatcctcccggacttcgactacatccgggaccggctggacgacatcgaggcgatc
gtgctcacgcacggtcacgaggaccacatcggcgcggtgccctacctgttgcggctgcgc
caagacatccctctggtcggctcccagctgacgctggccttcgtcgaggccaagctcaag
gagcaccggatcacgccgctgaccctgcccgtgcgcgaggggcagaccgagcagctcggc
gtcttcgagtgcgagttcgtcgcggtcaaccactcgatcccggacgcgctggcggtggct
gtgcgcacgcccgcgggcaccgtgctcaacaccggcgacttcaagatggaccagctcccg
ctggacggacggatcaccgacctgcgcgccttcgctcggctcggtgagcagggcgtcgac
ctgttcatggtcgactcgaccaacgccgaggtacccgggttcgtgacgggcgagcgcgag
atcggccccgtgctggaccgggtgttcgccgagtcgacccgccggatcatcgtcgcgtcg
ttcgcctcgcacgtgcaccgcgtccagcaggtgctcgacgctgccgcgatgcacgagcgc
cgggtcgccctcgtggggcgctcgatggtccggaacatgacgatcgcggccgagctgggc
tacctgcacgtcccggagggggtgctggtcgaccagaagcaggtcgacgacctgccggac
gaccaggtcgtcttcatgtgcaccgggtcccagggcgaaccgatggcggcgctgtcgcgc
atcgcgaacggcgaccaccgcatcagcgtcggccccggcgacacggtgatcctggcctcg
agcctgatccccgggaacgagaacgccgtgttccgcgtcatcaacggcctgacccggctc
ggtgcgcgcgtcgtgcactccggcaacgccaaggtgcacgtctccgggcacgccagcgcc
ggtgagctgctctacgtctacaacgtcctgcggccgcgcaacgtgatgccgatccacggc
gaggtgcggcacctcgtcgcgaacgccgcgctggccgtccgcaccggcgtccccgccgac
cgcgtggtcctggcggaggacggcgtggtggtcgacctggtcgacgggcgcgcctccgtg
gccggtgccgtgccgtgcggctacgtctacgtcgacggctcgagcgtgggcggcatcacc
gaggccgagctgaaggaccgccggatcctgggcgacgagggcttcgtgtccatcttcgcc
gtcgtcagctcggcggacggcaaggtgctcgccgggccgcagatccacgcgcgcggtgtc
gccgagcaggactccgtgttcgacgccgtgctgccggagctgtccgcggcactggaggag
gcggccaggtcgagctcggtcgacacgtaccagctgcagcaggtggtgcgccgggtggtc
ggtcggttcgtggcgagccgtctgcggcgccggccgatgatcatcccggtggtcgtcgag
gcctga
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