Cellulomonas sp. NTE-D12: CELD12_27350
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Entry
CELD12_27350 CDS
T10634
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
celn Cellulomonas sp. NTE-D12
Pathway
celn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
celn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CELD12_27350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
celn03021
]
CELD12_27350 (rpoC)
03400 DNA repair and recombination proteins [BR:
celn03400
]
CELD12_27350 (rpoC)
Enzymes [BR:
celn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CELD12_27350 (rpoC)
Transcription machinery [BR:
celn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CELD12_27350 (rpoC)
DNA repair and recombination proteins [BR:
celn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CELD12_27350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
BDO43245
LinkDB
All DBs
Position
complement(2953315..2957184)
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEDGRAEDLPNLQNEIDLEKKEIADRRDNDINTRAAKLEAD
LAELEAEGAKADARRKVRDSAEREMAQLRKRADTELERLETVWDRFKNLKVADLEGDEML
YRQLQDRYGNYFEGSMGAQAIKKRLEAFDLDAEAASLRETIRVGKGQRKTRALKRLKVVN
AFLTTNNSPTGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPTQDMIIGLYHLTSDRPGAKGEGR
AFSSVSEAIMAFDQGTLDLNAVVKIRMDGLVLDEERAPEGWTQGEPLLFETTLGRALFND
LVPVDYPYENGVVDKKRLSAIVNDLAERYPKVEVAASLDALKEAGFRWATRSGVTIAISD
VATPTEKKAILEENEARAAKVQGQYDKGLITDDERRQELINIWTEATDKVAKAMQANFPA
RNTVYRMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKANYREGLSVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIVRELDCGTERGLTMPIGVDAGDGTLRRHDK
VETSVFSRTLATDIEIDGEVIGHAGDDVGDVLLDRLLEAGVTELKVRSVLTCESRVGTCA
KCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPRVQEL
FEARTPKGEAPIAEFSGRIAIEEGDRSRRIVLTPDDGSEEISIPVTKRQRLLVADGDHVS
VGTQLVLGAVDPKKVLRILGPRATQKHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRRVT
VLDSGDTDLLPGELSERGRFEDANRKAVSEGGQPASGRPELMGITKASLATDSWLSAASF
QETTKVLTEAAMSSRSDPLLGLKENVILGKLIPAGTGLARYRDIAVEPTEEAKAELYPAF
GYDEIDFPALGMGTGDAIPLEDIDFGDYR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgcatcggcctggccacggccgacgacatc
cgtgcctggtcgcacggtgaggtgaagaagcccgagaccatcaactaccggaccctgaag
ccggagaaggatggcctgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccggtccaaggtgcgccgcgagcgcatgggccacatcgagctggccgctccc
gtgacgcacatctggttcttcaagggtgtgccgtcgcgcctgggctacctgctcgacctc
gcgccgaaggacctggagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggacggccgcgccgaggacctcccgaacctccagaacgagatcgacctggagaagaag
gagatcgcggaccgccgcgacaacgacatcaacacccgcgccgccaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggcggacgcccgtcgcaaggtgcgcgactcc
gcggagcgcgagatggcgcagctgcgcaagcgtgccgacaccgagctcgagcgcctcgag
acggtgtgggaccggttcaagaacctcaaggtcgcggacctcgagggcgacgagatgctc
taccggcagctgcaggaccggtacggcaactacttcgagggctcgatgggtgcccaggcg
atcaagaagcgcctggaggccttcgacctcgacgccgaggccgcgtcgctgcgcgagacg
atccgggtgggcaagggccagcgcaagacgcgtgccctcaagcgcctcaaggtcgtcaac
gcgttcctgacgaccaacaactcgccgaccggcatggtgctggacgcggtcccggtcatc
ccgccggacctgcgcccgatggtccagctcgacggtggccggttcgccacctccgacctg
aacgacctgtaccgccgcgtgatcaaccggaacaaccgcctcaagcggctgctcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggccgccgcggccgtccggtgaccggtccgggcaaccgcccgctcaag
tccatctcggacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgtgcccgc
ccggtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccccagctcgtcgagggcaag
gcgatccacctgcacccgctcgtctgcggcgcgttcaacgccgacttcgacggcgaccag
atggccgtgcacctgccgctgagcgccgaggcgcaggccgaggcccgcatcctcatgctg
tccagcaacaacatcctcaagccgtcggacggccgtccggtgaccatgccgacccaggac
atgatcatcggcctgtaccacctgacgtccgaccggccgggtgccaagggtgagggccgc
gcgttcagctcggtgtccgaggcgatcatggccttcgaccagggcacgctcgacctcaac
gcggtcgtgaagatccgcatggacggcctggtcctcgacgaggagcgggcgcccgagggc
tggacgcagggcgagcccctgctgttcgagaccaccctcggccgtgcgctgttcaacgac
ctggtcccggtggactacccctacgagaacggcgtcgtcgacaagaagcgcctctcggcc
atcgtcaacgacctggccgagcggtacccgaaggtcgaggtcgccgcgtcgctcgacgcc
ctgaaggaggccggcttccgctgggccacccgctcgggcgtgaccatcgccatctccgac
gtcgccacgccgacggagaagaaggcgatcctcgaggagaacgaggcgcgcgccgccaag
gtgcagggccagtacgacaagggtctgatcacggacgacgagcgtcgtcaggagctcatc
aacatctggaccgaggcgaccgacaaggtcgccaaggcgatgcaggcgaacttcccggcg
cgcaacaccgtctaccgcatggtgggttcgggtgctcgaggcaactggatgcaggtccgg
cagatcgccggcatgcgtggtctggtggccaacccgaagggcgagatcatccctcggccc
atcaaggcgaactaccgcgagggtctgtccgtcctggagtacttcatcgcgacgcacggc
gcccgcaagggtctggcggacaccgctctgcggaccgccgactcgggctacctcacgcgt
cgtctggtggacgtgtcgcaggacgtcatcgtccgcgagctggactgcggcaccgagcgc
ggcctgaccatgccgatcggggtggacgccggcgacggcactctgcgccggcacgacaag
gtcgagacctcggtcttctcgcgcacgctggccaccgacatcgagatcgacggcgaggtc
atcggccacgccggtgacgacgtcggcgacgtgctgctcgaccggctgctcgaggcgggc
gtcaccgagctcaaggtgcgctccgtgctcacctgcgagtcgcgggtcggcacgtgcgcc
aagtgctacggccgttcgctggccaccggcaagctcgtcgacatcggcgaggcggtcggc
atcatcgccgcccagtcgatcggtgagcccggcacgcagctgacgatgcgtacgttccac
accggcggtgtcgcctcggcggaggacatcacgcagggtctgccgcgtgtccaggagctc
ttcgaggcccgcacccccaagggtgaggcgccgatcgcggagttctcgggccgtatcgcg
atcgaggagggcgaccggtcccgccggatcgtcctgacgccggacgacgggtcggaggag
atctccatcccggtgaccaagcgtcagcgcctgctggtcgcggacggggaccacgtctcc
gtcggcacccagctggtcctcggtgccgtcgaccccaagaaggtgctgcgcatcctcggc
ccgcgggccacgcagaagcacctggtggacgaggtccaggaggtctaccgctcgcagggt
gtggacatccacgacaagcacatcgaggtcatcgtccggcagatgctgcgccgggtgacc
gtcctcgactcgggcgacaccgacctgctgccgggcgagctgtccgagcgtgggcgcttc
gaggacgcgaaccgcaaggccgtgtccgagggtggtcagccggcgtccggccgtccggag
ctgatgggcatcaccaaggcgtcgctggccacggactcgtggctgtcggcggcctccttc
caggagacgaccaaggtgctgaccgaggctgcgatgtcgagccggtccgacccgctgctc
ggcctgaaggagaacgtcatcctcggcaagctgatccccgccggcaccgggctcgcccgg
taccgggacatcgcggtggagccgaccgaggaggcgaaggccgagctgtacccggccttc
ggctacgacgagatcgacttcccggccctcggcatggggaccggcgacgcgatcccgctt
gaggacatcgacttcggcgactaccgctga
DBGET
integrated database retrieval system
