Cedecea neteri M006: LH23_01850
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Entry
LH23_01850 CDS
T03328
Name
(GenBank) transcriptional regulator
KO
K17473
sigma-54 dependent transcriptional regulator, dga operon transcriptional activator
Organism
cem
Cedecea neteri M006
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cem03000
]
LH23_01850
Transcription factors [BR:
cem03000
]
Prokaryotic type
Helix-turn-helix
Other families
LH23_01850
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PRD
Sigma54_activ_2
AAA_5
AAA_22
AAA
Mg_chelatase
NACHT
AAA_16
AAA_14
HTH_Crp_2
AAA_2
TrmB
AAA_24
IstB_IS21
AAA_25
AAA_7
Motif
Other DBs
NCBI-ProteinID:
AIR59439
UniProt:
A0AAN0VRU4
LinkDB
All DBs
Position
complement(406355..409153)
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AA seq
932 aa
AA seq
DB search
MRRIEIILGELERLTQGVDLTDLAKETAFTAEAIGFNLGLARNSVSKDLNQLWNDGLAIK
SRGRPVFFLHRHALEAVLGRKLDDAEREVRSVADLLPCQEKLSGDDPFSGLIGYDRSLRD
AVDKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACEHASGGTPPLVYFNCAEYAHN
PELLSSHLFGHRQGAFTGANENKPGLVEQADGGYLLLDEVHRLPYEGQEKLFSILDKGEY
RPLGSSAVARPISVRLICATTEPVNSALLRTFQRRIQVCIDLPGIRQRSVEEQIELIIGF
LQRESRKIERTVSLDKTLLLWLLNKPLEGNIGQLKSDIQFLCAQAWASGMTEHQDTLQLD
KRLAEMPFNATPEQRLLVDTLFDGKERLNVDARTLPALKSSLATGSEIEESDLFYSFLTR
EYVNLRNSNVPPAETLAILKNKLSSIFEYGLYSRDSVVHPPRYGGQVEERVTLLIGCVEQ
VLGFSLPENLVNPLRKHFLALIGYVQRGLIPQLYSSSLILDRCKDEYENATQLCRKINEL
LHIQCPATEVVWLCLFLKECRHYRQRIDASPDCGVILIAHGATTATSMAQYVNRVLERDL
FSAIDMPFEQSVHDTLETLTLMIQTRRYRRLILMVDIGSLVHFGSTISKLFQIDVLLMPN
ITLTSLLEVGLDLNYETSDLPQLAALMQSKNIPCQLCTPQQESGGKVLVVSCITGMGTAE
KIKKVLEESFGELMSQDTRMVILDYNEVRSLERVQQALGVGERLAGIVGTFQPGLPDIPF
ISLEELFSEQGPELVLSLLTPDLSSSERRLEMERSAMRFISALTMESIINHISVLNPQRI
LKEMEGVLNHLTSALSLKPSRQVTLRFLIHCCCMVERIVINRKPLQMALENRPDLDVRAF
SVIKSVFQPIEEAYGIRLSDAEYIYIYELLYS
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagacggattgagattattttgggggagctggaacggctgacacagggagtggatctt
actgatttagcaaaggaaacggcattcacggcagaagctattggctttaacctcgggctg
gctagaaactcggtcagtaaagatctcaaccagttatggaacgatggcctggccatcaaa
agccggggtcgcccggttttctttttgcaccgtcatgcgctggaagccgttcttggacgc
aagctggatgacgccgagcgtgaagtgcgatcggtggccgatctgctcccatgccaggaa
aagctcagcggggacgatccttttagcggtctgattggctacgatcgcagcctgcgcgat
gcggtagacaaaggccgtgccgcggtactttacccccacggattacacgtgctgctaacc
gggccttccggcgtcggtaaaacctttttcgccgagttaatgcaccgttttgcctgtgag
cacgcttctggcggcacaccgccgctggtctattttaactgcgcggaatatgcccataac
ccggagctactttcttcgcacctgttcggccaccgccagggggcgtttaccggggcgaat
gaaaataaacccggccttgtggagcaggcagacggcggctacctgctgctggatgaagta
catcgcttgccgtatgaagggcaggagaaactcttttctattctcgacaaaggggaatac
cggccgctgggatccagcgccgtggctcgccctatttcagtccgcctgatttgtgccacc
accgagccggtcaattccgcgctgctgcgtactttccagcggcgtattcaggtgtgtatt
gatttgccgggtattcgccagcgttctgttgaagagcaaattgagttgattattgggttc
ttgcagcgtgaaagccgcaaaatagagcgcacggtcagccttgataaaaccctgctgctc
tggctgctcaataagccgctggagggcaatatcggccagctcaaaagcgatattcagttc
ttgtgcgctcaggcatgggcgtcgggcatgactgagcatcaggacacgctgcagctggat
aaacggctggcagaaatgccgtttaatgccacgccagaacagcggctgctggttgatacg
ctgtttgatggcaaagagcgtttaaacgttgatgcgcgtacgctgccggcgctaaaaagc
tccctggccaccgggagtgaaatagaagagagcgatctcttttacagcttcctgacccgc
gaatacgttaacctgcgcaacagcaatgtccccccggcggaaacgctggcgatcctgaaa
aataagctgagttcgatttttgaatatggtctctacagccgggacagcgtggttcatcct
ccgcgatatggcggccaggtggaagaacgcgtgacgctgcttatcggctgcgtggagcag
gtgcttggattttcactgcctgaaaatttggttaacccgctgcgtaaacattttctggcg
ctgattggctacgtgcagcgcggcctgatcccacagctttattcctcaagcctgatcctg
gaccgctgcaaagacgagtacgaaaacgccacgcagctgtgccggaaaattaacgaactg
ctgcacattcagtgcccggcgacggaagttgtctggctgtgcctgttcctgaaagagtgc
cggcattatcgccagcgcattgatgccagccccgactgcggggtcattttgattgcccac
ggggcgaccaccgccaccagtatggcgcaatacgtcaatcgcgtattagagcgcgatctg
ttcagcgccattgatatgccttttgagcagtcggtacatgacaccctggaaacgttaacc
ctgatgattcagacccggcgctatcggcggctgatcctgatggtagacattggctcgctg
gtacattttggcagcaccatcagcaagttattccagatagatgttctactgatgccgaat
attacgcttaccagtttgttggaggtagggctggatttaaactatgaaaccagtgattta
ccgcagctggctgcgctgatgcaaagcaaaaacattccctgtcagctctgtacgccgcaa
caggaaagtgggggcaaagtgctggtggtgtcctgcattaccggtatggggacggcggaa
aaaatcaaaaaagtgctggaggagagctttggtgagctgatgtcgcaggacacgcgaatg
gttatcctcgattacaacgaagttcgcagtctggagcgcgtgcagcaggcactgggcgtt
ggcgagcggctagcggggatcgtcgggactttccagcctggcctcccggatattccgttt
atttcgctggaggagttgttttccgaacaggggccggagctggtgttaagcttgctgacg
ccggatctctccagcagcgaacggcgtctggaaatggaacgtagtgccatgcgttttatc
agcgctttgaccatggaaagtatcattaaccacatttcagtgcttaatccacagcgcatt
ctcaaagagatggagggtgtacttaaccatctgacctcggcgctttcgctcaaaccgagt
cgccaggtgacactgcgctttctgatccactgctgctgcatggtcgagcgtatcgtgatt
aaccgtaaaccgttacagatggcgctggaaaacaggccagatctggacgttcgcgcgttt
agtgtcatcaaatctgtgttccagccaatagaagaggcttacggcatccgcttatcggat
gcagaatatatttatatttacgaactgctttatagctaa
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