Cedecea neteri M006: LH23_02770
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Entry
LH23_02770 CDS
T03328
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cem
Cedecea neteri M006
Pathway
cem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH23_02770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cem03019
]
LH23_02770
03009 Ribosome biogenesis [BR:
cem03009
]
LH23_02770
Enzymes [BR:
cem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH23_02770
Messenger RNA biogenesis [BR:
cem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH23_02770
Ribosome biogenesis [BR:
cem03009
]
Prokaryotic type
rRNA helicases
LH23_02770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
LisH_WDR26
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AIR59611
UniProt:
A0AAN0S1G0
LinkDB
All DBs
Position
complement(593671..595596)
Genome browser
AA seq
641 aa
AA seq
DB search
MTDIIETTFSDLGLHASIIQALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSGLKGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNADLLGERRLAKFAAKVQQQLESSDLDLYRGLLAKIQPSAEEELD
IETLAAALLKMAQGERPLILPPDAPMRPRREFKERDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGRDGGRGFGGERREGGRG
PRREGAGAGAGRSFSGERRDGGRGPRREDGAATARRRFGDA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatcatcgaaactactttttctgatctggggctgcatgcctctatcattcag
gccctgaacgatctgggctacgaaaagccatcaccaattcaggctgagtgtatcccacac
ctgctgaatggccgtgacgttctgggtatggcccagactggtagcggtaaaactgcagcg
ttttccctgccgctgctgaacaacctcgatcctgagctgaaagcaccacaaattctggtg
ctggccccgacccgcgaactggcggttcaggttgctgaagccatgacggatttctctaaa
catatgcacggcgtgaacgttgtggccctttacggcggccagcgttatgacgtacagctg
cgcgccctgcgtcagggaccacagattgttgtgggtaccccagggcgtctgcttgaccac
ctgaaacgcggtaccctgaacctgtccggcctgaaaggtctggtgctggatgaagcggat
gaaatgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggcc
gaacatcagaccgcgctgttctctgccaccatgccggaagcgattcgtcgcattacccgt
cgcttcatgaaagatcctcaggaagtgcgtattcagtccagcgtaactactcgcccggac
atcagccagagcttctggtctgtttatggcatgcgtaaaaacgaagcactggttcgtttc
ctggaagcagaagactttgatgcggcgatcatcttcgttcgtaccaaaaacgcgaccctg
gaagtggctgaagcgctggagcgtagcggttacaacagcgccgcgctgaacggtgacatg
aaccaggcgctgcgtgagcagaccctggagcgcctgaaagatggtcgtctggacatcctg
atcgccaccgacgttgcggcccgtggcctggacgtggagcgtatcagcctggttgttaac
tacgacatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgct
ggtcgtgctggccgcgcgctgctgttcgttgagaaccgtgaacgccgcctgctgcgcaac
atcgaacgcaccatgaagctgactattccagaagtagagctgccaaacgcagatctgctg
ggtgagcgtcgtctggctaaattcgccgctaaagttcagcagcagctggaaagcagcgat
ctggacctgtaccgtggcctgctggctaaaattcagccttctgctgaagaagagctggac
atcgaaacgctggctgcagccctgctgaaaatggctcagggtgagcgtcctctgatcctg
ccaccagatgcaccgatgcgcccacgtcgcgaattcaaagagcgtgacgatcgtttcgaa
cgtcgcggcgaccgtaatgaccgtggcccacgtggcgaccgtccagagcgtggtggtgaa
gatcgtccacgtcgtgagcgtcgtgacgctggcgatatggaactgtaccgcatcgaagtg
ggccgtgatgatggcgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcgggactcactccaccatcgagctg
ccgaaaggcatgccaggtgaagtactgcagcactttacccgtactcgtattctgaacaag
ccgatgaatatgcagctgttgggtgacgcacagcctcgtccagagcgcagcggcgaacgc
cgtggcggtcgtgacggtggtcgtggcttcggcggcgagcgtcgtgaaggcggtcgtggt
ccacgtcgtgaaggcgctggggcaggtgctggccgtagcttcagcggtgaacgccgtgac
ggtggccgtggcccgcgtcgtgaagacggagctgcaaccgctcgtcgtcgcttcggtgat
gcataa
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