Cedecea neteri M006: LH23_05560
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Entry
LH23_05560 CDS
T03328
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cem
Cedecea neteri M006
Pathway
cem03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LH23_05560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cem03400
]
LH23_05560
Enzymes [BR:
cem01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LH23_05560
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LH23_05560
DNA repair and recombination proteins [BR:
cem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LH23_05560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
C1_2
zf-dskA_traR
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AIR60145
UniProt:
A0AAN0VSY6
LinkDB
All DBs
Position
1169388..1170197
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AA seq
269 aa
AA seq
DB search
MPELPEVETSRRGIEPHLVGETILYAVVRNARLRWPVSDEIHALSDKPVLSVQRRAKYLL
LELPDGWIIIHLGMSGSLRILAEELPAEKHDHVDLIMSNGKVLRYTDPRRFGAWLWVKEL
EGSNVLAHLGPEPLSEAFSAEYLREKSAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAG
IHPDRSAQSLSKKESETLVAAIKAVLQRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRE
GEPCRVCGTPIAAAKHAQRSTYYCRRCQR
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggtagaaaccagtcgtcgcggtattgagccgcacctggtgggt
gaaaccatcctgtatgccgttgtgcgcaatgctcgactgcgctggccggtttctgatgaa
atacatgctctgagcgataagcccgtgctgagcgtgcagcggcgggcgaagtatttgctg
ctggagctaccggatggctggatcatcattcacctgggaatgtccggcagtctgaggatc
ctcgcggaagaacttcctgcggaaaagcacgatcatgtcgatctgatcatgagcaacggc
aaagtccttcgctacaccgatccgcggcgttttggtgcctggctatgggtcaaagagctt
gaggggagtaacgtattggctcatctcgggccagagccgctgagcgaggcattcagtgca
gaatacctgcgtgaaaaatcggccaaaaagaaaacggctatcaagccctggctgatggat
aacaaactggttgtcggggtggggaatatctatgccagcgaatccttgttcgcggcgggg
atccatcccgaccgtagcgcgcagtcgctatcaaaaaaagagtctgaaactctggtcgcg
gcgatcaaagcggtattgcagcgctcaatagagcaaggtggaacgactttaaaagacttc
cttcagtccgatggcaaacctggctattttgctcaggagctgcaggtatatgggcgggaa
ggagaaccttgcagggtatgtggtacgccgattgctgccgctaagcacgctcagcgtagc
acctactattgccgccgctgtcagcgatag
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