Cedecea neteri M006: LH23_06170
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Entry
LH23_06170 CDS
T03328
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cem
Cedecea neteri M006
Pathway
cem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH23_06170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cem03019
]
LH23_06170
03400 DNA repair and recombination proteins [BR:
cem03400
]
LH23_06170
Enzymes [BR:
cem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH23_06170
Messenger RNA biogenesis [BR:
cem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH23_06170
DNA repair and recombination proteins [BR:
cem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH23_06170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6972
zf-CXXC
zf-CCCH_8
Motif
Other DBs
NCBI-ProteinID:
AIR60256
UniProt:
A0AAN0S2L3
LinkDB
All DBs
Position
1298528..1300357
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AA seq
609 aa
AA seq
DB search
MAQAEVINQASLARQVLQDTFGYQQFRPGQETIIDTVLEGRDCLVVMPTGGGKSLCYQIP
ALVFGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMMDNFIDHLSNWQLSMVAVDEAHCISQWGHDFRPEYAALGQLRERLPAVPFVAL
TATADDTTRLDIVRLLGLHDPFIQISSFDRPNIRYMLMEKFKPLDQLTRYIQEQRGKSGI
IYCNSRAKVEDIAARLQSKGISAGAYHAGLEHQVRGDVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRKCLEEKAPGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQSCGNCDICLDPPRRYDGLMDAQKAL
SCIYRVGQRFGMGYVVEVLRGSNNQRIRDLGHDKLKVYGEGREHTTEHWVSVIRQLIHLG
VVTQNIAAHSALQLTEAARPYLRGEEPLMLAVPRVVAIKPRASQKVFGGNYDRKLFAKLR
KLRKSIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLGINGVGTRKLERFGRPFMTLIR
DHVDGVDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcggaagtaatcaatcaggcgtcgctggcgagacaggttctgcaggatacc
ttcgggtatcaacagttccgtccgggtcaggaaaccatcatcgacacggtgctggagggg
cgtgactgcctggtagtgatgccgaccggtggcggtaaatccctgtgttatcaaattcct
gcgttggtgtttggcggcctgacagtggtggtctccccgctgatttccctgatgaaagac
caggtcgatcagctgctggcgaacggcgtggcggcggcctgccttaactcgacccaaacc
cgcgaacagcagctggaagtgatgaccggctgccgtaccgggcaaattcgcctgctgtat
atcgcccctgaacgcctgatgatggacaattttattgaccatctcagcaactggcagctt
tcgatggtggcggtcgatgaagcccactgcatttcacagtggggacacgatttccgcccg
gaatatgccgcccttggtcagcttcgcgagcggctacctgcggtgccgtttgtggcgctg
acggccacggcggacgacaccaccaggctcgatatcgtgcgcctgctggggcttcacgat
ccgtttatccaaatcagcagcttcgaccggccgaatattcgctacatgttgatggaaaag
tttaagccgctcgatcagctcacccgctatattcaggaacagcgcggtaagtccgggatt
atttactgcaacagccgggcaaaagtggaagacatcgccgcccggctgcaaagcaaaggc
atcagcgccggcgcttatcacgcagggctggagcatcaggttcgcggtgacgtgcaggaa
aaattccagcgcgacgatctgcaaatagtggtcgctaccgtcgcgtttggcatgggtata
aacaagccgaacgtgcgttttgtcgcccacttcgatattccccgcaacatcgaatcttac
tatcaggaaacgggccgtgccgggcgtgatggcctgcctgcggaagcgatgttgttttac
gacccagcggatatggcctggctgcgtaaatgccttgaagaaaaagcgccaggacagctg
caggacatcgagcgccataagctcaacgccatgggcgcgtttgccgaagcgcaaacctgt
cgccgcctcgtgctgctgaactacttcggcgaaggtcgtcaacagtcttgcggcaactgc
gacatctgcctcgatccgcctcgtcgctatgacggcctgatggacgcgcaaaaagcgctg
tcctgcatttaccgtgtcggccagcgctttgggatgggctatgtggttgaagtgctgcgt
gggtctaacaatcagcgtatccgcgaccttggtcacgataagctgaaggtttacggtgaa
ggccgtgaacatacgacggagcactgggtcagcgtgatccgccagctcatccatctcggc
gtggtgacgcaaaatatcgctgcacactcggcgctgcagctcacggaagcggctcgccct
tatttacgtggtgaagagccgctgatgctggcggtaccgcgcgtcgtcgctattaagccg
cgtgccagccagaaagtctttggtggcaattacgatcgcaagctgttcgccaaactcaga
aagctgcgtaaatctatcgcggatgaagaaaacatcccgccttatgtggtattcaacgat
gccacactgattgaaatggcggaacagatgccgctgtcgccgggcgagatgctgggcatc
aacggggtggggacgcgcaaactcgagcgctttggccgcccgtttatgacgctgattcgc
gaccacgttgacggcgtggatgaagagtag
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