Cedecea neteri M006: LH23_07695
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Entry
LH23_07695 CDS
T03328
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cem
Cedecea neteri M006
Pathway
cem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH23_07695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cem03019
]
LH23_07695
03016 Transfer RNA biogenesis [BR:
cem03016
]
LH23_07695
Enzymes [BR:
cem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LH23_07695
Messenger RNA biogenesis [BR:
cem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LH23_07695
Transfer RNA biogenesis [BR:
cem03016
]
Prokaryotic type
tRNA degradation factors
LH23_07695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
TFIIE_beta
HTH_20
HTH_11
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AIR60540
UniProt:
A0AAN0S3U4
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All DBs
Position
1612654..1615101
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AA seq
815 aa
AA seq
DB search
MSKDPFQEREAEKYENPIPSREFILDHLSKREKPASREELAEELKISGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGKVIGHRDGFGFLRVEGSKDDLYLSSEQMKMCMH
GDLVLAQPLGADRKGRREARIVRVLEPRTGLIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EALMGARMGFVVVVELTQRPTRRTKAIGKIVEVLGDNMDTGMAVDMALRTHEIPHVWPKE
VEAQVANLKEEVPEEAKIGRVDLRDLPLVTIDGEDARDFDDAVFCEKKRGGGWRLWVAIA
DVSYYVRPPTALDNEARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AAGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQELREQYAPLVKHIEELHNLYKVLEVS
RAQRGGISFESEEAKFIFNAERRIERVEQTVRNDAHKLIEECMILANISAARFVEKNNEP
ALFRDHDRPSNDAITAFRSVLAELGLELPGGQKPEPRDYADLLESIADRPDHEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHTGNSTESG
GWHYSMEEMLQLGQHCSMTERRADEATRDVADWLKCDFMQDQVGQVFNGIIASVTGFGFF
VRLDDLFIDGLVHVSTLDNDYYRFDQIGQRLIGESGGQTYRLGDRVEVRVEAVHMDERKI
DFALISSSRAPRGAGKTAKDKAKRGGNGGAPSKRRQAGKRVNFEPDNAFRKEKDGAKAKK
DKAGKKPKKAKAPSDKTRKIAAATKAKRAAKKQAS
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagatccttttcaggaacgagaagccgaaaaatacgaaaacccgatcccaagc
cgggagtttattctcgaccatctctcaaaacgtgaaaaaccggccagccgcgaagagctg
gcggaagaactaaaaatctccggtgaagaacagcttgaagctttgcgccgtcgcctccgt
gcgatggagcgtgatggccaactggtcttcactcgccgccagtgttacgcgctgccggaa
cgtctggacttactgaaaggtaaagtgatcggccaccgcgacgggtttggtttcctgcgc
gtcgaagggagtaaagacgatctctatctttcatctgagcagatgaaaatgtgcatgcat
ggcgatctggtactggcgcagccgctcggtgctgaccgtaagggccgccgcgaagcacgt
attgtgcgcgtactggagccaagaaccgggctgattgttggccgctactttaccgacgct
ggcgtaggttttgtggtgccggacgacagccgtctgagcttcgatattctgatcccgccg
gaagcgctgatgggcgcccgtatgggctttgtggttgtggtcgagctgactcagcgccca
acgcgtcgtaccaaagcgatcggtaagattgttgaagtgcttggcgacaacatggatacc
ggcatggccgttgatatggcgctgcgtacccatgaaatcccgcacgtctggccgaaagaa
gttgaagcccaggttgcaaacctgaaagaagaagtgccggaagaagccaaaatcggccgc
gttgatctgcgcgatctgccgctggtgactatcgacggtgaagatgcgcgtgactttgat
gacgccgtcttctgcgagaaaaaacgcggcggtggctggcgcctttgggtggcgatcgcc
gacgtaagctactatgttcgtccgccaacggcgctggataacgaagcccgcaatcgtggg
acgtcagtttacttcccgtcgcaggtagtaccgatgctgccggaagtgctttcaaacggc
ctttgttccctgaacccgcaggttgaccgcctgtgtatggtctgcgagatgaccatctcc
gcagcggggcgtctgacgggctataaattctatgaagcggtgatgagctcccatgcgcgc
ctgacctataccaaggtctggcatatgctgcagggcgatcaggaactgcgcgagcaatat
gcaccgctggttaagcacattgaagagctgcataacctctataaagtgctggaagtttct
cgtgcccagcgcggcgggatctcgtttgaaagcgaagaagcgaagtttatcttcaacgct
gagcgccgcattgagcgtgttgagcagaccgtgcgtaacgatgcacataaacttatcgaa
gagtgcatgatcctcgctaacatctcggcggcgcgttttgtcgagaagaataatgagcca
gcgctgttccgcgatcacgatcgcccaagcaacgatgcgatcaccgcgttccgttctgtg
ctggcggagctgggcctggaattacccggtgggcaaaaaccagagccgcgtgattacgcc
gatctgctggaatctatcgccgatcgccctgatcacgaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccggaaaaccgtggtcacttcggcctggcgctg
cagtcctacgcgcactttacttcgccaattcgtcgctacccggacttgtcgctgcaccgc
gccattaaatacttactggcaaaagagcaggggcataccggcaacagcaccgaatccggt
ggctggcactacagcatggaagagatgctgcagctgggtcagcactgctcaatgacagaa
cgccgcgccgacgaagcgactcgcgacgtagcggactggctgaaatgcgacttcatgcag
gatcaggtcggccaggtattcaacggcattattgccagcgtaactggcttcggtttcttc
gtgcgtctggacgatttgtttatcgacggcctggttcacgtctcgacgctggacaacgac
tactaccgctttgaccagattggtcagcgcctgattggcgaatccggcgggcagacttat
cgtctgggcgaccgcgttgaggtccgggtggaagccgtgcacatggacgagcgtaaaatc
gacttcgcgcttatctcaagctcacgtgcgccgcgcggtgcaggcaaaacggcaaaagac
aaagcgaagcgaggcggaaatggtggcgcaccgtctaaacgccgtcaggcaggcaagcgc
gtaaacttcgaaccggacaatgctttccgtaaagagaaagacggagcgaaagcgaaaaaa
gataaggctggaaagaaaccgaagaaagccaaagcgccgtcggataaaacccgtaaaata
gccgcagcaaccaaggcgaagcgcgccgcgaagaagcaggcgagctga
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