Cedecea neteri M006: LH23_08280
Help
Entry
LH23_08280 CDS
T03328
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cem
Cedecea neteri M006
Pathway
cem02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LH23_08280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cem03021
]
LH23_08280
Transcription machinery [BR:
cem03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LH23_08280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
HTH_SUN2
Motif
Other DBs
NCBI-ProteinID:
AIR60653
UniProt:
A0A291E2F7
LinkDB
All DBs
Position
complement(1735569..1737413)
Genome browser
AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENSNSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEEMDDDEDEDEESDDDSSDDDNSIDPELAREKFGELRKQYELTRDTIKAKG
RSHADAAAEILQLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHEVSEDVHRSLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSES
LRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctcaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgatcag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcccct
gatgccgatgatcttttgcttgctgaaaactcaaacagcaccgatgaagacgcggaagaa
gcggctgctcaggtactgtccagcgtggaatccgaaatcggacgtaccaccgaccctgtg
cgtatgtacatgcgcgaaatggggaccgttgaactgttaacccgtgagggtgagatcgat
atcgcgaagcgtatcgaagacggtatcaaccaggtacagtgctcggttgccgagtatccg
gaagcgatcacctatctgctggagcagtacgatcgcgtcgaagctgaagaagcgcgcctg
tccgaccttatcaccggctttgttgacccgaacgcggaagaagatcttgcaccaaccgca
acccacgtcggctccgaactctctcaggaagagatggacgatgatgaggacgaagacgaa
gagtctgacgacgacagctccgacgatgacaacagcatcgacccggaactggcgcgcgaa
aaatttggtgagctgcgtaagcagtacgaactgactcgcgacaccatcaaagcgaagggc
cgcagccacgctgacgccgccgcggagatcctgcagctgtctgaagtgttcaaacagttc
cgcctggtgccaaaacagttcgactacctggtcaacagcatgcgcgtcatgatggaccgc
gttcgtacccaagaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaag
aaaaacttcatcacgctgttcaccggcaacgaaactagcgaaacctggttcaacgcggcc
attgcgatgaacaagccgtggtctgagaagctgcatgaagtgtccgaagacgttcaccgc
agcctgcagaagctgcagcagatcgaagaagagaccggcctgaccatcgagcaagtaaaa
gacatcaaccgtcgcatgtccattggtgaagcgaaagcgcgccgtgcgaagaaagagatg
gttgaagccaacttgcgtctggttatttctatcgcgaagaaatacaccaaccgtggcctg
cagttcctcgacctgattcaggaaggcaacatcggcctgatgaaagccgttgataagttt
gaataccgccgtggttataagttctcgacttatgcaacctggtggatccgtcaggctatc
acccgctccatcgccgaccaggcgcgtaccatccgtattccggtgcacatgattgagacc
atcaacaagctcaaccgtatttcgcgccagatgctgcaggagatgggccgtgaaccaacg
ccggaagagttagccgagcgtatgctgatgccggaagacaaaatccgtaaagtgctgaaa
attgccaaagagcctatctccatggaaacgccaatcggcgacgatgaggattcgcatctg
ggtgatttcatcgaggacaccaccctcgagctgccgctggattctgccacctccgaaagt
ctgcgttccgcaacgcacgacgttctggctggcctgacagcgcgtgaagcgaaagtcctg
cgtatgcgcttcggtatcgatatgaacaccgaccacacgctggaagaagtgggtaaacag
ttcgacgttacccgcgaacgtatccgtcagatcgaagcgaaggcgctgcgcaaactgcgc
cacccaagccgctctgaagtcctgcgtagcttcctggacgattaa
DBGET
integrated database retrieval system
