Cedecea neteri M006: LH23_09180
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Entry
LH23_09180 CDS
T03328
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cem
Cedecea neteri M006
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cem03019
]
LH23_09180
Enzymes [BR:
cem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LH23_09180
Messenger RNA biogenesis [BR:
cem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LH23_09180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
HA2_N
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AIR60827
UniProt:
A0AAN0S427
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All DBs
Position
1933938..1936373
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AA seq
811 aa
AA seq
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MSSLPVAAVLSEVLKALEYAPQVLLNAPTGAGKSTWLPLQILQQSKLEGRILLLEPRRLA
ARNVAQRLAELLGEKPGETVGYRIRADSCVGPNTRLEVVTEGILTRLIQQDPELNGIGLV
ILDEFHERSLQADLALALLLDVQAGLRDDLKILIMSATLDNQRLQQCLPDAPVITSEGRA
FPVERRYMALPAHQRFDEAVGAAVAGLLREESGSLLLFLPGVGEIQRVQEQLKERVASDV
QLCPLYGALPLSEQRKAILPAAAGTRKVVLATNIAETSLTIEGIRLVVDAAQERVARFDA
RTGLTRLVTQRVSQASMTQRAGRAGRLEPGICLHLIAADQAERAAAQSEPEILQSDLSGL
LLELLQWGCQDARQLTWLDVPPEANLAAAQRLLRQLGAVDEQQRLTAEGQRMAQMGNDPR
LASMLVKAKTPDEQATAAWLAAILEEPPRTQGGGDLRTFFDSRNGNWRQRAAQLLKRINA
RSGEPDISLAMPLLASGFADRIARRRGAEGRYQLANGMGAMLEQDDAMTRHEWLIAPLLL
QGSQSPDARILLALPLDVEELVARIPQLLTESDSVEWDEERGALKAWRRRQIGKLVVKTQ
LLAKPSEEEMQQAILNGIRERGLGLLEWSVPAQQLRLRLSCAARWLPEQKWPAVDDDSLL
AKLEDWLLPEMRGVHSLRALKNIDLSRALGNLLDWPMRQRLDSALPTHYTVPTGSQIAIR
YDSENPPVLAVRIQEMFGEAQTPCIAEGRVPLVLELLSPAQRPLQITRDLTAFWNGAWRE
VQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
gtgtcctcattaccggttgcggccgtactgtcggaagtgctgaaagcgcttgagtacgcc
ccgcaagttttgctcaacgcccctaccggcgcaggtaaatctacctggttgccgctgcaa
atcctccagcagagtaagctggaaggtcgcattttgctgcttgaacctcgtcgccttgcc
gcccgcaatgttgctcagcggctggccgagttattgggtgagaaaccgggagaaactgtc
ggctaccggatacgggctgacagctgcgtggggccaaacacccggcttgaggtggtgacc
gaagggattttaacgcggttgatccaacaggatcccgagcttaacggtattgggcttgtg
atcctcgatgaatttcatgagcgcagtcttcaggccgatctcgccctggcgctgctgctg
gacgtgcaggccgggcttcgcgatgaccttaaaatcctgattatgtcggcgacgctggac
aatcagcgcctgcagcaatgcctgccggatgcgccggtgattacctctgaaggtcgtgct
ttcccggttgagcgccgctatatggctctgccagcgcatcagcgctttgatgaagccgtt
ggcgccgccgtggccggcttgctgcgtgaggagtcaggatcgctgctgttgtttttaccc
ggcgtgggtgaaattcagcgcgtgcaggaacaactcaaagagcgggtggcgagcgatgtt
cagctatgcccgctgtacggcgctttacccctgagcgagcagcgtaaagcgattctgccc
gccgcagcgggaacccggaaggtggtgctggcgactaatattgccgagaccagtttgacc
attgaaggtatccgcctggtggtggatgcagcgcaggagcgcgtcgctcgctttgatgct
cgtaccgggctgacccggctggtcactcagcgtgtgagtcaggcgtcaatgacccagcgt
gccgggcgcgccgggcgtctggaaccggggatttgcctgcatctgatcgctgccgatcag
gccgaacgtgcggcggcccagagcgaaccggaaatcttacaaagcgatttatcaggcctg
ctgctggagctattgcaatggggctgccaggacgcgcgccagctaacctggcttgatgtg
ccgccggaggcaaaccttgctgcagcccaacgtctgctacgtcagctaggggccgttgac
gagcagcaacgcctgacggcagaagggcaaagaatggcgcagatgggtaacgacccgcgt
cttgcctcgatgctggtgaaggccaaaacgccggatgaacaggccacagccgcgtggctt
gcggcaatcctggaagagccgccgcgtactcaggggggcggtgatttacgaacgtttttc
gacagcaggaatggtaattggcggcaacgcgccgcgcagttgctgaaaagaataaatgcc
cgaagcggggagccggatatctctctagctatgccgctgctggcaagcgggtttgccgat
cgtatcgcccggcggcgcggggcagaaggccgttatcagttagccaacggcatgggcgcg
atgctggagcaggatgacgcgatgacgcggcatgaatggctgatagcgccgcttttgctg
cagggtagccagtcgccggatgcccgcattctgctggcgctgccgctggatgttgaagag
cttgtcgcgcgtattccgcagctgctgacggaaagtgattcggtggagtgggatgaagag
cggggggcgttaaaagcctggcggcgtcgtcaaatcggcaaattagtggtgaaaactcag
ctgttagcgaagccttctgaagaggaaatgcagcaggcgattttaaacggcattcgcgaa
cgcgggcttgggctgctggagtggtccgttccggctcagcagctgcggttgcgcctgagc
tgcgcggcccgctggctgccggagcagaaatggcctgcggtggatgatgattccctgctg
gcgaagctcgaagactggctgttgccggaaatgcgaggcgtgcattcgctgcgtgcgttg
aaaaatatcgatcttagccgggcgctgggcaacttgcttgactggccaatgcgtcaacgg
ctggatagtgccctgccaactcattacactgtgccgaccggaagccagattgcgattcgc
tatgacagcgaaaatccgcctgtactggctgtgcgtatccaggaaatgtttggtgaagca
cagacgccttgcatcgccgaggggcgcgttccgctggtgcttgagctattatctccggcg
cagcggccgttgcagatcacccgtgacttaacggcgttctggaacggggcctggcgcgaa
gtgcagaaagagatgaagggacgttatccgaagcacgtctggccggacgatccggcgaat
actgccccgacgcgccggacgaaaaagtattcctga
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