Cedecea neteri M006: LH23_18050
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Entry
LH23_18050 CDS
T03328
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cem
Cedecea neteri M006
Brite
KEGG Orthology (KO) [BR:
cem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cem03016
]
LH23_18050
Enzymes [BR:
cem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LH23_18050
Transfer RNA biogenesis [BR:
cem03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LH23_18050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
OSR1_C
Motif
Other DBs
NCBI-ProteinID:
AIR62490
UniProt:
A0AAN0S7V4
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All DBs
Position
3798488..3800422
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AA seq
644 aa
AA seq
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MLQDNPLLAQLKQQLHSQTPRAEGVVKGTEKGFGFLEVDANKSYFIPPPQMKKVMHGDRI
SAVIHTDKDRESAEPETLIEPFLTRFVGRVQKKDDRLSIVPDHPLLRDAIQCRAARDVTH
DFQNGDWAVAEMRRHPLKGDRGFYAELTQFITFGDDHLAPWWVTLSRHNLEREAPDGVAT
EMLDDGLVREDLTSLDFVTIDSASTEDMDDALYVEELADGKLQLTVAIADPTAWIAEGSK
LDGIAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANVVRPVLACRMTIEQDGAIASDIHF
FAANIESKAKLVYDEVSDWLEEKGGWQPQSDAIAQQIRLLHRVCLARSEWRQTHALVFKD
RPDYRFILGEKGEVLDIVAEPRRIANRIVEESMIAANVCAAIVLREKLGFGIYNVHTGFD
PANTEQLATMLQTHGITVDAQEVLTLEGFCKLRRELDAQPTGFLDSRIRRYQSFAEISTE
PGPHFGLGLEAYATWTSPIRKFGDMVNHRLLKAIIKGEAAARPTEDTTVQMAERRRLNRM
AERDVGDWLYARFLSPKAGTDTRFAAEIIDVSRGGMRVRLVENGAVAFIPAPFIHAVRDE
LVCSQENGTVQIKGEVVYKVTDVIDVTIAEVRMETRSVIARPAA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaggataacccgctgctcgcgcagctaaaacagcaactgcattcacagactcca
cgcgctgaaggcgtggtgaaaggcacggaaaaagggttcggcttcctcgaagtcgacgcg
aataaaagctactttattccaccgccgcagatgaaaaaagtgatgcacggcgaccgtatc
agcgccgtcatccacaccgataaagaccgtgagtccgccgagccggaaacgcttatcgaa
cctttcctgacgcgttttgttggccgcgttcagaaaaaagacgaccgcctgtcaattgtg
ccggatcacccactgctgagagatgccattcagtgccgcgcggcgcgcgatgtgacgcat
gacttccagaacggtgactgggcagtggctgaaatgcgccgtcacccgctgaagggcgat
cgtggcttctacgccgagttaacccaattcatcaccttcggcgacgatcatctcgcaccg
tggtgggtgacactgtcacgtcataatcttgaacgcgaagcgccagacggcgtggccacc
gaaatgcttgacgatggtctggtgcgcgaagacttaacgtcgctggattttgtcaccatc
gacagcgccagcaccgaagatatggacgatgcgctgtacgttgaagaacttgctgacggc
aaactgcagctgaccgtggccatcgctgacccaacggcgtggatcgcggaaggcagcaag
ctcgacggcatcgccaaaattcgcgctttcaccaactatctgcctggcttcaacattcca
atgctgccgcgcgagctgtcagacgacctctgctccctgcgtgccaacgttgtccgccct
gtcctcgcctgccgcatgaccattgagcaggacggcgctatcgccagcgacattcatttc
ttcgccgcgaatatcgagtctaaagccaagctggtttatgacgaagtttctgactggctg
gaagagaaaggtggctggcagccgcagagcgacgccattgcacagcaaattcgcctgctg
catcgcgtttgcctggcccgcagcgaatggcgtcagacccacgcgctggtctttaaagat
cgcccggattatcgctttattttgggcgagaaaggcgaagtgttggatatcgtggccgag
ccgcgccgcatcgcaaaccgtatcgttgaagagtcgatgattgcggctaacgtttgtgcg
gccatcgtgctgcgcgagaagctgggcttcgggatttataacgttcataccggtttcgac
ccggctaatactgaacagctggccaccatgctgcaaacccacggcatcaccgtggacgcg
caggaagtgctgacgctggaaggcttctgcaagctgcgccgcgaactggacgctcagccg
accgggttcctggacagccgcattcgtcgttaccagtcgttcgcggagatcagcaccgag
ccaggcccacacttcggcctgggcctggaagcctacgccacctggacttccccaatccgt
aaattcggcgatatggttaaccaccgtttgctgaaagcgattattaaaggcgaagcggcg
gctcgtccgacggaagacactaccgtccagatggcggaacgccgtcgtctaaaccggatg
gccgagcgtgacgtgggcgactggctgtacgctcgtttcctgagcccgaaagccggcacc
gatactcgcttcgcggcagagattatcgatgtcagccgcggcgggatgcgcgtgcgtctg
gtggaaaacggcgctgtcgcatttatccctgcgccattcatccacgcggtacgtgatgaa
ctggtttgcagccaggaaaacggcaccgtgcagatcaaaggcgaagtggtttataaagtg
accgacgttatcgacgtaaccatcgcggaagttcgcatggaaacgcgcagcgttatcgct
cgccctgctgcctga
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