Cedecea neteri ND14a: LH86_02715
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Entry
LH86_02715 CDS
T03337
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cen
Cedecea neteri ND14a
Pathway
cen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH86_02715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cen03019
]
LH86_02715
03009 Ribosome biogenesis [BR:
cen03009
]
LH86_02715
Enzymes [BR:
cen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH86_02715
Messenger RNA biogenesis [BR:
cen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH86_02715
Ribosome biogenesis [BR:
cen03009
]
Prokaryotic type
rRNA helicases
LH86_02715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
AAA_22
LisH_WDR26
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AIR64027
LinkDB
All DBs
Position
complement(572622..574547)
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AA seq
641 aa
AA seq
DB search
MTDIIETTFSDLGLHASIIQALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQIVVGTPGRLLDHLKRGTLNLSGLKGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSFWSVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVELPNADLLGERRLAKFAAKVQQQLESSDLDLYRGLLAKIQPSAEEELD
IETLAAALLKMAQGERPLILPPDAPMRPRREFKERDDRFERRGDRNDRGPRGDRPERGGE
DRPRRERRDAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPERSGERRGGRDGGRGFGGERREGGRG
PRREGAGAGAGRSFSGERREGGRGPRREDGAATARRRFGDA
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactgatatcatcgaaaccactttttctgatctggggctgcacgcctccatcattcag
gccctgaacgatctgggctacgaaaagccatcaccaattcaggcagaatgtattccacat
ctgctgaatggccgcgacgttctgggtatggcccagaccggtagcggtaaaactgcagcg
ttctctctgccgctgctgaacaacctcgatcctgagctgaaagcaccacaaatcctggtg
ctggccccgacccgcgaactggcggttcaggttgctgaagccatgacggatttctctaaa
cacatgcacggcgtgaacgttgtggccctttacggcggccagcgttatgacgtgcagctg
cgcgctctgcgtcagggtccacagattgttgttggtactccagggcgtctgcttgaccac
ctgaaacgcggtaccctgaacctgtccggcctgaaaggtctggtcctggatgaagcggat
gaaatgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggct
gaacatcagaccgcgctgttctctgccaccatgccggaagcgattcgtcgcattacccgt
cgcttcatgaaagatcctcaggaagtgcgtattcagtccagcgtgactactcgcccggac
atcagccagagcttctggtctgtttatggcatgcgtaaaaacgaagcgctggttcgtttc
ctggaagcagaagactttgatgcggcgattatcttcgttcgtaccaaaaacgcgaccctg
gaagtggctgaagcgctggagcgcagcggttataacagtgccgcgctgaacggggacatg
aaccaggcgctgcgtgaacagaccctggagcgcctgaaagatggtcgtctggacatcctg
atcgccaccgacgttgcggcccgtggcctggacgtggagcgtatcagtctggttgttaac
tacgacatcccgatggactctgaatcttacgttcaccgtatcggccgtaccggtcgtgct
ggtcgtgcaggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaac
atcgaacgcaccatgaagctgacgatccctgaagtagagctgccaaacgcagatctgctg
ggcgagcgtcgtctggctaaattcgccgctaaagttcagcagcagctggaaagcagcgat
ctggatctgtaccgtggcctgctggcaaaaattcagccttccgctgaagaagagctggac
atcgaaacgctggctgcagcactgctgaaaatggctcagggtgaacgtcctctgatcctg
ccaccagatgcaccgatgcgcccacgtcgcgaattcaaagagcgtgacgatcgcttcgaa
cgtcgcggcgaccgtaatgaccgtggcccacgtggcgaccgtccagagcgcggtggtgaa
gatcgtccacgtcgtgaacgtcgcgatgctggcgatatggaactgtatcgcatcgaagtt
ggccgtgacgatggcgttgaagtgcgtcacatcgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaaactgttcgggactcactccaccatcgagctg
ccgaaaggcatgccgggtgaagttctgcagcactttacccgcactcgtattctgaacaag
ccgatgaatatgcagctgctgggtgacgcgcagcctcgtccagagcgcagcggcgaacgc
cgtggcggtcgtgacggtggccgtggtttcggcggcgagcgtcgtgaaggcggtcgtggt
ccacgtcgcgaaggcgctggtgcaggtgctggtcgtagcttcagcggtgaacgccgtgaa
ggtggccgtggcccgcgtcgcgaagacggagctgcaaccgcacgtcgtcgcttcggtgat
gcataa
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