Cedecea neteri ND14a: LH86_06100
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Entry
LH86_06100 CDS
T03337
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cen
Cedecea neteri ND14a
Pathway
cen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH86_06100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cen03019
]
LH86_06100
03400 DNA repair and recombination proteins [BR:
cen03400
]
LH86_06100
Enzymes [BR:
cen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LH86_06100
Messenger RNA biogenesis [BR:
cen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH86_06100
DNA repair and recombination proteins [BR:
cen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LH86_06100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF6972
zf-CXXC
zf-CCCH_8
Motif
Other DBs
NCBI-ProteinID:
AIR64668
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All DBs
Position
1281765..1283594
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AA seq
609 aa
AA seq
DB search
MAQAEVINQASLARQVLQDTFGYQQFRPGQETIIDTVLEGRDCLVVMPTGGGKSLCYQIP
ALVFGGLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY
IAPERLMMDNFIDHLSNWQLSMVAVDEAHCISQWGHDFRPEYAALGQLRERLPAVPFVAL
TATADDTTRLDIVRLLGLHDPFIQISSFDRPNIRYMLMEKFKPLDQLTRYIQEQRGKSGI
IYCNSRAKVEDIAARLQSKGISAGAYHAGLEHQVRGEVQEKFQRDDLQIVVATVAFGMGI
NKPNVRFVAHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRKCLEEKAPGQL
QDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQQSCGNCDICLDPPRRYDGLMDAQKAL
SCIYRVGQRFGMGYVVEVLRGSNNQRIRDLGHDKLKVYGEGREHTTEHWVSVIRQLIHLG
VVTQNIAAHSALQLTEAARPYLRGEEPLMLAVPRVVAIKPRASQKVFGGNYDRKLFAKLR
KLRKSIADEENIPPYVVFNDATLIEMAEQMPLSPGEMLGINGVGTRKLERFGRPFMTLIR
DHVDGVDEE
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
gtggcacaggcggaagtaatcaatcaggcgtcgctggcgagacaggttctgcaggatacc
ttcgggtatcaacagttccgtccaggtcaggaaaccatcattgacacggtgctggagggg
cgtgactgcctggtggtaatgccgaccggtggcggtaaatccctgtgttatcaaattcct
gcgctggtgtttggcggcctgaccgtggtggtctctccgctgatttcgctgatgaaagac
caggtcgatcagctgctggcaaacggcgtggcggcggcctgccttaactccacccaaacc
cgcgaacagcagctcgaagtgatgaccggctgccgtaccgggcagattcgcctgctgtat
atcgcccctgagcgcctgatgatggacaactttattgaccatctcagcaactggcagctt
tcgatggtggcagtggatgaagcccactgcatttcacaatggggacacgatttccgcccg
gaatatgccgcccttggtcagcttcgcgaaagattgcctgccgtcccctttgttgcatta
acggccacggcggatgacaccaccaggctcgatatcgtgcgcctgctggggctccacgat
ccgtttatccaaatcagcagctttgaccggccgaatattcgctacatgctgatggagaag
tttaagccgctcgatcagctcacccgctatattcaggaacagcgcggtaagtccgggatt
atttactgcaacagccgggcaaaagtggaagacatcgccgcccgactgcaaagcaaaggt
atcagcgccggtgcttatcacgcggggctggagcatcaggtgcgtggtgaagtgcaggaa
aaattccagcgcgacgatctgcaaattgtggtcgcgaccgtcgcgtttggcatgggtatc
aacaagccgaacgtgcgttttgtcgcccacttcgatattccccgcaacatcgaatcttac
tatcaggaaacgggccgtgccgggcgcgatggcctgcctgcggaagcgatgttgttctac
gatccggcggatatggcctggctgcgtaaatgccttgaagaaaaagcgccgggacagctg
caggacatcgagcgccacaagctcaacgccatgggcgcgtttgccgaagcacaaacctgt
cgccgcctcgtgttgctgaactacttcggcgaaggtcgccagcagtcttgcggcaactgt
gatatatgcctcgatccgcctcgtcgctatgacggcctgatggacgcgcaaaaagcgctg
tcctgcatttatcgcgtcggccagcgctttgggatgggctacgtggttgaagtgctgcgt
ggttctaacaatcagcgcatccgcgaccttggccacgacaagctgaaggtttacggcgaa
ggccgcgaacatacgacggagcactgggtcagcgtgatccgccagctcatccacctcggc
gtggtgacgcaaaatatcgccgctcactcagcgctgcagctcacggaagcggcacgtcct
tacctgcgtggtgaagagccgctgatgctggcggtgccacgcgtagttgctatcaagcct
cgagccagccagaaagtctttggcggcaattacgatcgcaaactgttcgccaaactcaga
aagctgcgtaaatctatcgcggacgaagaaaatattccgccttatgtggtattcaacgat
gccacgctgattgaaatggcggagcagatgccgctgtcgcccggtgaaatgctgggcatt
aacggggtggggacgcgcaaacttgagcgctttggtcgcccgtttatgacgctgatccgc
gaccacgttgacggcgtggatgaagagtag
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