Cedecea neteri ND14a: LH86_11420
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Entry
LH86_11420 CDS
T03337
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cen
Cedecea neteri ND14a
Pathway
cen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LH86_11420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cen03019
]
LH86_11420
Enzymes [BR:
cen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LH86_11420
Messenger RNA biogenesis [BR:
cen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LH86_11420
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AIR65668
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All DBs
Position
2386670..2388067
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AA seq
465 aa
AA seq
DB search
MSFDSLGLNADILRAVEEQGYREPTPIQRQAIPVVLSGRDLMASAQTGTGKTAGFTLPLL
QRLTDSAPHQKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAR
RQNLLFSATFSDDIKALAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLQKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRIALPGFDVDPSIPAEPIVNGRQQRGGGGRGGQGGRGGQSQGQGQRRGGSG
GNANASGERNNGPRRSGKPQGEGAAKPAGDNARRRRPPRKPAAAQ
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattctctcggcctgaatgccgatattttgcgtgcggtggaagagcagggc
tatcgcgagcctaccccaatccagcgccaggcaatcccggtagtcttatcaggccgtgac
ctgatggccagtgcccaaaccggcaccggcaaaaccgcaggctttaccctgccgctgtta
cagcgtctgaccgacagcgcccctcaccagaagggccgtcgcccggtgcgtgcgctgatc
ctcaccccaacccgcgaactggcggcgcagattggtgagaacgtccgcgactacagcaaa
tatttaaatatccgctcgctggttgtcttcggcggcgtgagcattaacccgcagatgatg
aagctgcgcggcggcgtggatgtgttggtggcaaccccaggccgtctgctggatcttgag
catcagaatgccgtgaagctagatcagatcgagatcctggtgctggacgaagccgaccgt
atgctggatatgggtttcattcatgacattcgccgcgtgctggctaaactgcctgcgcgc
cgccagaacctgctgttctccgctactttctccgacgacattaaagcgctggctgaaaag
ctgttgcacaacccggaagaagtggaagtggctcgccgcaacacggcgtctgagcaggtc
acgcagcacgttcactttgtggacaaaaaacgcaagcgggaactgctgtcgcagatgatt
ggcgaaggcaactggcagcaggtgctggtgttcacccgcaccaaacacggcgctaaccat
ctggcagagcagctgcaaaaagacggtatcaccgcggcggcaatccacggtaacaagagt
cagggcgctcgtacacgcgcgctggcggacttcaaaagtggcggtattcgcgtgctggtg
gcgaccgatatcgccgctcgcggcctggacattgaagaactgccgcacgtcgttaactat
gagttgccgaacgtaccggaagactacgtgcaccgtattggccgtacaggtcgtgcggca
gccaccggtgaagcgttgtctctggtttgcgtggatgaacataagctgctgcgtgacatc
gagcgtctgctgaagcgcgagatcccacgtatcgcattgccaggttttgacgttgatccg
tctattccggctgagccaatcgtcaacggtcgtcagcagcgtggcggcggtggtcgtggc
ggccagggtggtcgcggtggtcaaagccaggggcagggccagcgtcgcggtggcagcggc
ggaaacgcaaatgcttccggtgagcgtaacaacggcccgcgccgcagcggtaaaccgcag
ggcgaaggtgctgcgaagccggcaggggacaatgctcgtcgccgtcgcccaccgcgtaaa
ccagcggctgcgcagtaa
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