Cedecea neteri ND14a: LH86_16960
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Entry
LH86_16960 CDS
T03337
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cen
Cedecea neteri ND14a
Brite
KEGG Orthology (KO) [BR:
cen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cen03032
]
LH86_16960
03400 DNA repair and recombination proteins [BR:
cen03400
]
LH86_16960
Enzymes [BR:
cen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LH86_16960
DNA replication proteins [BR:
cen03032
]
Prokaryotic type
DNA Topoisomerases
LH86_16960
DNA repair and recombination proteins [BR:
cen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LH86_16960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF3700
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AIR66710
LinkDB
All DBs
Position
complement(3573101..3575698)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTTKKSADSTAAKGAKKVK
KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKSLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEIDANLSTPKGDALPVQVSH
HKDKPFRPVNREQTMAAVSLLEKARYTVLDREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVSMVRGYIEENFGKKYLPADANQYASKDN
SQEAHEAIRPSDVSVQAEALKDMEADAQKLYQLIWRQFVACQMTPAKYDSTTLTVEAGEY
RLKARGRTLRFDGWTKVMPALRKGDEDRTLPAVNPGESLTLVELLPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDQVANNQAEWKGVLDNFFTDFSGQLEKAEQDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELHRFRDRLPEKLRYLADAPQEDPEGNKAFVRFSRKTKQQYV
ASDKDGKATGWSAFFVDGKWVVGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgttatcgttgagtccccggcaaaagccaaaacgatcaacaaatat
ctcggaaacgactacgtggtgaagtccagcgtcggtcacatccgtgatttgccgaccagt
ggatcaaccaccaagaagagcgctgactctaccgccgccaaaggggccaaaaaggtcaaa
aaggatgaacgcggagcgctcgtcaaccgtatgggtgtcgatccctggcataactgggat
gctcattacgaagtgctgccgggcaaggagaaagtggtctccgagctgaaatccctggca
gaaaaagcagaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagttatcggcggcgacgacacccgctacagccgcgtggtgtttaac
gaaatcactaagaatgcgattcgtcaggcgtttgaaaagccgggtgaactgaatattgac
cgtgtgaacgcccagcaggcgcgccgctttatggaccgcgtcgtgggctacatggtgtct
ccgctgttgtggaaaaagattgcgcgtggcctgtcagccgggcgcgtccagtccgtggcg
gttcgccttgtagttgagcgtgaacgcgaaattaaagcgttcgtcccggaagagtactgg
gaaatcgacgccaacctgtcgacgccgaagggcgatgcgctgccggtgcaggtcagtcac
cataaagataaacctttccgtccggttaaccgcgaacagaccatggcggccgttagcctg
cttgaaaaagcgcgctacaccgttctggatcgtgaagacaagccaaccagcagcaaaccg
ggggcgccgttcatcacctccacgctgcagcaggctgccagcacccgtcttggcttcggc
gtcaagaaaaccatgatgatggcgcagcgtctttacgaagcgggccacattacctacatg
cgtactgactctaccaacctgagccaggacgcggtgagcatggtacgcggctacatcgaa
gaaaacttcggtaagaaatacctgccagcggatgccaatcaatacgccagcaaggataac
tctcaggaagcgcacgaagcgattcgtccttctgatgtgtccgtgcaggcggaagcgtta
aaagacatggaggcggatgcccagaagctttatcagcttatctggcgccagttcgtcgcc
tgccagatgacgccagcgaaatacgactccaccacgttgacggtggaagccggtgagtac
cgcctgaaggcgcgtggtcgtacgctgcgttttgatggctggacgaaagtgatgccagcg
ctgcgcaagggcgatgaagatcgcaccttaccggcggtgaatccgggagaatccctgacg
ctggttgagctgcttcctgcgcagcactttaccaagccgcctgcgcgtttcagcgaagca
tcgctggtgaaagagttggaaaaacgcggtattggccgcccgtccacctacgcttctatc
atttcgaccattcaggatcgtggctacgtgcgcgttgagaaccgccgtttctacgctgaa
aaaatgggtgagattgttaccgatcgtctggaagagaacttccgcgagctgatgaattac
gacttcacggcgcaaatggaagacagtcttgaccaggtggccaataaccaggccgaatgg
aaaggcgtgctggacaatttcttcactgattttagcggccagcttgagaaagccgagcag
gatccggaagaaggcggtatgcgcccgaaccagatggttctgaccagcatcgactgccca
acctgcggtcgtaaaatggggatccgcaccgcgagtaccggcgtattcctcggctgctct
ggctatgcgttaccgccgaaagagcgctgcaaaaccaccatcaatctggtgccggagaac
gaggttctcaacgtgctggaaggtgacgatgcggaaacgaacgccctgcgcgccaagcgt
cgctgccagaaatgcggtacggcgatggacagctacctcatcgatccgaagcgcaagctg
cacgtgtgcggtaataacccgacctgtgacggctacgaaatcgaagaaggtgagttccgc
atcaagggctatgacggcccaatcgttgagtgtgaaaaatgtggctccgaaatgcacctg
aaaatggggcgttttggtaagtacatggcctgtaccaatgacgagtgtaagaacacccgt
aagatcctgcgtaacggcgaagtagcgccaccgaaggaagatccggttccgctgccagag
ttgccgtgtgagaagtctgacgcgtatttcgtgctgcgtgatggcgctgccggcgtcttc
ctggccgcgaacactttcccgaaatctcgtgaaacacgcgccccgctggtagaagagctg
catcgcttccgcgatcgcctgccggagaagctgcgctatctggccgacgctcctcaggaa
gatccagaggggaataaagcgttcgttcgctttagtcgtaaaacgaagcagcagtacgtg
gcttctgataaagacggtaaagcgaccggctggtcagcgttcttcgttgacggcaagtgg
gtcgttggtaagaaataa
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