Cardinium endosymbiont of Oedothorax gibbosus: CAOE_0649
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Entry
CAOE_0649 CDS
T08548
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ceng
Cardinium endosymbiont of Oedothorax gibbosus
Pathway
ceng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ceng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAOE_0649 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ceng03021
]
CAOE_0649 (rpoC)
03400 DNA repair and recombination proteins [BR:
ceng03400
]
CAOE_0649 (rpoC)
Enzymes [BR:
ceng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAOE_0649 (rpoC)
Transcription machinery [BR:
ceng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAOE_0649 (rpoC)
DNA repair and recombination proteins [BR:
ceng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAOE_0649 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
CAH2560023
UniProt:
A0A8X6ENN2
LinkDB
All DBs
Position
1:complement(779230..783525)
Genome browser
AA seq
1431 aa
AA seq
DB search
MKFKKNNAHSTQFSGIIASLSSPEVILSRSSGEVTLPETINYRTHKPETKGLFCERIFGP
VKDWECHCGKYKGIRYKGIVCDRCGVEITEKKQRRQRVGHIELVVPVTHIWYFKVLPSKI
SYLLGLPTKKVEQIIYYERYVVMQPGIKKEDGIAAMDLLSEDEYLDILDQLPADNPLLSN
SDPNKFIALIGSEAIESILKGLDLEKLSIYLREQLLTDASQQRRLEIVKRLKIVEGFRDV
HKKVENRPEWMVMRILPVIPPELRPLFSLGGGKFATSDLNDLYRRVIIRNNRLKRLLAIK
APQIIIRNEMRMLQEAVDSLFDNSRKVNSVASEGIRPLKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELRLHECGLPKEMAVELFMPFIIRRLIERGVAETVKVAKRLIEEKDP
VIWDVLENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAVQLHPLVCTAFNADFDGDQM
AVHVPLGQQAIAEASLLMLASYNVLNPSNGIPITIPSRDMILGLHYLTKGKRSTPGDVVL
GEGISFYAPEEVLIALAHKKVSKHAYVKLRVPTTDLDGTVEYRLIETTVGRVVFNEYCPA
GMAFVNETLNVRNMQRIVTDMYSKFGTVVTVEFLDNIKALGFNTAFKAGMTIGLDDVKVP
ANKHELIAQATEEVESIWGNYMLGLITDNERYNQVIDVWTRTNTRITNQLMEQLEQDQNG
FNSVYMMMISGARGSREQVRQLGGMKGLIGRPQKSTQGAVGEIIEHPIISNFQEGLNVIE
YFIATHGARKGLADTALKTADAGYLTRRLVDVAQDLTVVEEDCGTLKGISVTAVQVENRI
VEPLAERILGRVVVDDVLDPQTGALLIARGHGIDEQIAVNIEKAGLEEVFVRSVLTCDLS
QGVCVKCYGRNLSTGNMVSVGEAVGVIAAQSIGQPGTQLTMRTFHVGGIASNVTVDAKVK
AKYAGIINFEDLMVTEYVDSNGQEVKVVMSRSAELQILDPDTRKVLTSTHLPYGAHLKVK
NNQIVSYDQELYHWDPYNVVLLATQDGVVNFLGLEEGITYQEEFDEQTGRKAKVMIESRD
KTKHPSVVLCDDAGVTIASYTLPVKAQLAVEVGDKVHKGEVLARVPRIINQSRDITGGLP
RVVELFEARKPANTAFISELSGVVTYGGIKRGNREIFIQSKEGIQVKYMIPLSKHILVQD
NDYVKVGEVITDGAVAAADLLVTKGPLVAQEYIMNELQNVYRLQGEKINNKHIETIIKQM
MRKVEVIDPGDTTMLHGQIVDKVKFFEENDKIRDQSIVLTPGDSKLFKQGQFVSSSRLLQ
ENDKLKEQGLVSVEARPVELAIAQPKLQGITQISLATESFLSAASFQETAKVLSDAAVSA
KYDKLKGLKENIIVGHLIPAGTGMRCYEKLVVNSKKEYDALASAKASATGG
NT seq
4296 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttaaaaaaaataacgcacactccactcaattttctggtattattgccagtctt
tcttctccagaggttattttatctcgttcatcaggagaagtgaccctgccagaaaccatt
aattatagaacccacaagcctgaaaccaaggggttgttttgtgagcgtatatttggccct
gtaaaagactgggaatgtcattgtggcaagtacaaaggcattcgctataaaggcattgta
tgtgatagatgcggtgttgaaattacagaaaaaaagcaacgtaggcaacgggttggccac
atcgagttggtggttccggtaacccatatttggtactttaaggtgctccctagtaaaatt
agttatttacttggtctacctactaaaaaggtggaacagattatatactatgagcgttat
gtagtaatgcaacccggtatcaaaaaagaagatggtatagctgctatggatctgctatcc
gaggatgagtatctggatattttagatcagttgcctgcagataatccattactcagtaac
tcagatcctaataagtttatcgccctaattggttcagaagctattgaatctattctaaaa
gggcttgacttagaaaagctttcaatttatttaagggaacagttattgaccgatgcgtct
caacaacgtcgtctagaaattgtcaaaaggctaaagattgtagaagggtttagggatgta
cataaaaaagtagaaaatcgtccagaatggatggtgatgcgtatattgcctgttattcct
cctgagttacgtcctcttttttcactgggcggtgggaaatttgctacttctgatttgaat
gatctctatagaagggttattattagaaataataggctcaaaagattattagctattaag
gcccctcagatcatcatacgtaatgaaatgcgtatgttgcaggaggcagtagattcttta
tttgataattcccgtaaagtcaattctgttgcttcagagggcattcggccattgaaatcc
ctttctgatatgttgaaagggaagcaaggccgttttaggcagaatttacttggtaagcgc
gtggactattccggtaggtctgttattgtggtagggcctgagttacggctccatgagtgt
gggctgcctaaagagatggcagttgagctatttatgccctttatcatacgtaggcttata
gagcgtggcgtagcagaaaccgtaaaagttgccaaaaggttaatagaggaaaaagatcct
gttatttgggatgtattagagaatgtattgaaaggtcatcctgtattgcttaaccgagcg
ccaaccctccaccgattgggtatacaagcctttcagcctaagttgattgaaggcaaagcc
gttcaattgcatcctttggtttgtactgctttcaacgccgattttgatggggatcaaatg
gcggttcatgtgccccttgggcagcaagccattgccgaagcttcattgcttatgttggcc
tcttacaatgtattgaatccttcaaatggtattcctattaccattccatctcgtgatatg
attttgggattgcattatctaaccaagggaaaacgtagtactccaggtgatgttgtatta
ggagagggtatctctttttatgcgcctgaagaagtattgattgcattggcccataaaaag
gtttctaaacatgcttatgtcaagctgcgtgtgcccaccacggatttagatggaacggtc
gagtatcgtttaatagagacaacggtgggtagagtagtgttcaatgaatattgtccagct
ggcatggcatttgttaatgaaacgcttaatgttagaaacatgcagcgcattgtaacagat
atgtacagtaaatttggtacagttgttacagttgagtttttagataatattaaagcttta
ggttttaatacagcattcaaggcagggatgaccattgggctggatgatgtgaaggtacca
gccaataagcatgaattgattgcccaagctactgaggaggtggagtccatttggggtaat
tatatgttgggtttaataactgataatgaaagatataatcaagttattgatgtgtggacc
agaaccaatacacgtattaccaatcaactaatggaacagttggagcaagaccaaaacggt
tttaattccgtttacatgatgatgatttctggtgcaaggggttcccgtgaacaggtgcgt
cagttaggcggtatgaaaggattaattggtaggcctcaaaagagtacacaaggagcagta
ggagaaattattgagcaccctattatttctaacttccaagaggggttgaatgtgattgag
tattttattgctacgcacggtgctaggaagggattggctgatactgccttaaaaacagcc
gatgcagggtatctcaccaggaggttagtagatgtagcacaagacttaaccgtcgttgaa
gaggattgtggtacccttaaaggtattagtgtaactgctgtgcaagttgaaaatagaata
gttgaaccacttgcagaacgtattctagggcgtgtagtagtggatgatgtgttggatcct
caaacaggcgctttgttgattgcgcgtggccatggaattgatgagcaaattgctgttaac
atagaaaaggctggtctagaagaagtgtttgtacgttctgtattgacctgtgatttgtct
caaggcgtttgtgtaaaatgttatggtcgaaacttgtccacaggtaatatggtatccgtt
ggcgaagcagtgggggtaattgctgcccaatctattgggcaacctggtacacagcttacc
atgagaaccttccatgtcgggggtattgcctctaatgttacggttgatgctaaggtcaaa
gcaaagtatgcaggtattataaattttgaagacctaatggttacagagtatgtagattca
aatggccaggaagtgaaagtcgtcatgagtcgctctgctgagctgcaaattttagatcct
gatacaagaaaagtattaaccagtacccatttgccatatggtgcccaccttaaggtaaaa
aacaatcaaatcgtaagctacgatcaagaactttaccattgggatccttataacgttgtg
ttattggctactcaggatggagtagtgaatttcctaggtcttgaagagggcattacctat
caagaagagtttgatgaacaaacagggcgtaaagcaaaggtaatgattgagtctagggat
aagaccaaacatccaagtgttgttttatgtgatgatgcaggtgtcaccattgcctcatat
acacttcctgttaaagcacaactggcagtggaagtaggtgataaggttcataaaggtgaa
gtattggctagggtccctcgtatcattaatcaatctcgagatattacgggtggtttgcct
cgtgtagtcgagctttttgaggctagaaagcctgctaatactgcttttattagtgagtta
agtggtgtggtaacttatggtggcattaaaagaggcaatagagaaatttttattcaatct
aaagaaggcatacaggtcaagtatatgatcccattatctaaacatattttggttcaagac
aacgactatgttaaagtaggggaggtgatcacggatggtgcagtagctgctgctgacctt
ttggttacaaaaggtccactggttgcacaggaatacatcatgaatgagttgcaaaacgta
taccgtttacaaggtgagaaaatcaataataaacatattgaaaccatcattaagcagatg
atgcgtaaagtagaggtcatagatccaggcgatacaaccatgttgcatgggcaaattgtt
gataaagttaaattttttgaagagaatgataaaattcgtgatcagtctattgtgctaaca
cctggagattctaaattgtttaaacaggggcaatttgtttcctctagcaggttgctacaa
gagaatgataaactgaaggagcaggggttggtttctgtcgaagccaggccagtagaatta
gcgattgctcagccgaaactgcaaggtattacacaaatctccttggctacggaaagcttc
ttatcggcagcttctttccaagaaactgctaaagtattgagtgatgcagctgttagtgct
aagtatgataagctaaaaggcttgaaagagaacattattgtaggtcatttaattcctgct
ggaacgggtatgcgatgttatgaaaaattggttgtaaattctaaaaaagagtacgatgct
ttagcctctgctaaagctagtgcaacaggaggataa
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integrated database retrieval system
