Cardinium endosymbiont of Oedothorax gibbosus: CAOE_0650
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Entry
CAOE_0650 CDS
T08548
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ceng
Cardinium endosymbiont of Oedothorax gibbosus
Pathway
ceng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ceng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAOE_0650 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ceng03021
]
CAOE_0650 (rpoB)
03400 DNA repair and recombination proteins [BR:
ceng03400
]
CAOE_0650 (rpoB)
Enzymes [BR:
ceng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAOE_0650 (rpoB)
Transcription machinery [BR:
ceng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAOE_0650 (rpoB)
DNA repair and recombination proteins [BR:
ceng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAOE_0650 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CAH2560024
UniProt:
A0A8X6H3L2
LinkDB
All DBs
Position
1:complement(783577..787452)
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AA seq
1291 aa
AA seq
DB search
MKKKQSSKQNCHMPSSDAAANYTDLLEIQLKSFRDFFQLGVSPESRINEGLYKVFMEHFP
IEDSKRNYILEFIDYNLELPQYTPRECIERGLTYDVPLKAKLRLLQNDEYTGKYEGVEQE
VFLGNVPYMTDQGSFILSGVERVVVSQVHKSSGIFFFQNRHISGSSVYTAKVVPAKGVWI
EFSVDINSVMYIYLDRKKKIPITTMLRAIGYSSDKDILDIFGLADEVEASRAVLEKHIGR
KLAARVLKSCAERYVDEETGEEYVRTSHEVLVERNTVLDEAAIEVILFSEVSSIILHKSE
TAYMDYHLVYNSFGKDNTNDTKEAIEQIYRQLRNAEAPDEQAARETVESLFFSSKRYTLG
EVGRYRINKKLNLDIPVKTAVLTQEDIVQIIHYLIKVVNGKAEVDDIDHLSNRRVRSVGE
QLYTQFGVGLSRLARTIRERINIRDNELFKPADLINARTLSSVINSFFGINPLSQLIDQV
NPLAEITHKRRVSALGPGGLSRDRAGFEVRDVHYSHYGRLCTIETPEGMNIGLISSLCMY
ARVNSMGFIETPYRRVEDGKVDLSGVIYYLSASEEENANFAPANVRLDSNGAILDSRIKV
RNGDEYPLVKPERVNYMDVASSQIASVAASLIPFLEHNDASRALMGSNMQRQAVPLVRPD
VPIVCTGVEKRVAKEFRGLPTAEGSGLVTYVDSRKIVVQYDRSAEEALVAFDDASVTYSM
DKFRGTNRSTCINLLPIVSKGSRVEKGQVLGEGYATKNAELALGKNLKVAFLSWKGYTFE
DGIVISERIVRDDVFTSIHIKEFILEVKDTKFGAEELTNEIPNVSEEAIAKLDLHGIVKI
GTEVKEGDILIGKVTPKGEVDVTPEARLLKAIFGDKAGDVKNTSLRVPSGMEGIVIDTKI
FSSPERNKQNKEKIKKELELLKKAHAKHLLKLRDIAIKKLSVVLDGVVTNGIYHQFGDEI
IAEGIHLTASLIAEKLFPSKNIYRDESLYNVPAEANLIGDLVLSNWTADPSKNDLVQRIV
GNYIKKYTESIVRFKRERFTLEAGDGLPKGVVKVAKVYIAEKRKLKVGDKMSGRHGNKGI
VCKIVPQEDMPFLADGTPVDVVLSPLGLPSRMNLGQLYEAVLGWAGYQLGKRYTNPIFEG
MTLDQISSELDQAGLPAFGKTTVYDGGTGMPFDQKVTVGVVYLLKLAHLVDDKMHARSTG
PYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLNTKSDDVVGRSKAYEAIV
KGNNIPKPNLSESFNVLIHELRGLGLEITLV
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaaaaaacaatctagtaaacaaaattgccatatgccttcttctgatgccgctgca
aactatactgatttgcttgaaatccaattaaagtcttttagagacttttttcaactgggt
gttagtccagaaagtagaatcaatgaagggctctataaagtttttatggagcattttcct
attgaagattctaagcgaaactatattctggagtttattgattacaatttagaacttccc
caatatactcctcgggagtgtattgaacgcgggttgacctatgatgttcctttgaaagca
aagttacgcttgttacaaaatgatgagtatactggaaagtatgaaggagttgagcaagag
gtttttttgggtaatgtaccctatatgactgatcagggttcctttattttgagtggtgtg
gagcgtgtggtcgtttctcaggtgcataaatcttccggcattttcttttttcagaataga
cacattagtgggtcaagtgtttacactgctaaggtggttcctgctaaaggtgtttggatt
gaattttcggttgatatcaattcggtgatgtatatctacctagataggaaaaagaaaatt
ccaattaccactatgttgcgtgccattgggtatagtagtgataaggatatcttagatata
tttggtcttgcagatgaggtagaagcaagtagagctgtgctggaaaagcatataggccgt
aaattagctgctcgggttttaaaaagctgtgcggaacgttatgtagatgaagaaaccggt
gaagagtatgtacgcaccagccatgaagtccttgtagagcgtaacactgtattggatgaa
gcggctatagaggtgatcctattttctgaggtctcttctattattttgcataaatcagaa
acagcttatatggactaccaccttgtctataattcctttggaaaggataataccaatgat
accaaggaggcaatagaacaaatttatcgccagttgcgtaatgcggaggcccctgacgag
caggcggctcgtgaaacggtagaaagccttttttttagcagtaagcggtataccctgggt
gaggtaggtcgttataggatcaataaaaaattaaatctagacatcccggtaaagactgct
gtattgacacaagaagatattgtacaaattattcattatctcatcaaagtggtcaatggt
aaagcagaagtagatgatattgatcacttaagcaatcgccgggttcgttctgttggagag
cagctctatacccaatttggtgtaggactttctcgtttggctagaaccattcgtgaacgc
attaacattagagataatgagttatttaagcctgcagatctcattaatgcacgtacactt
tcttctgttatcaattctttttttgggatcaatccactttctcaattgattgatcaagtg
aacccactggcagaaattacccataaacgtcgtgtatctgcactagggcctggtggactt
tctagagatcgtgctggttttgaggttcgtgatgtgcactactcccactatggcaggttg
tgtaccattgagacaccggagggcatgaacattggtttgatttcttcgctctgtatgtat
gcgcgtgtaaatagcatggggtttattgaaacgccttataggcgggtagaggatggtaag
gttgatctaagtggtgtgatttattacctgagtgcttcagaagaagagaatgctaatttt
gctccagctaatgtacggttagattcaaatggtgctatcttagatagccgtattaaagtc
cgaaatggagatgagtatcctctggtaaaaccagaacgggtcaattatatggatgttgcc
agtagtcagattgcttcggttgctgcttctttgattccatttttggagcataatgatgcc
agtcgtgccttgatgggttctaacatgcaacgtcaggccgttcctctggtccgaccagat
gtgcccattgtttgcaccggtgtagaaaagagagtggctaaagagtttaggggcttacct
actgcagagggtagtgggctagtgacttatgtggatagtagaaaaattgttgtgcagtat
gatcgttcagcggaagaagcactcgttgcatttgatgatgcttctgtaacctactctatg
gataagtttagaggcaccaatcgaagtacttgtattaacctattgccaatcgtttctaag
ggaagtcgtgtggaaaaaggtcaagtacttggtgagggctatgctactaaaaatgcggag
ctggcactgggtaaaaatttaaaagtggccttcttatcctggaaaggatatacttttgaa
gatggtattgtgatttctgaacgtattgtgcgggatgatgtgtttacctctattcacatc
aaagaatttattctagaggtaaaggataccaaatttggtgcagaagagttaaccaatgaa
attcctaatgttagtgaagaagcgattgctaagttagaccttcatggaattgttaaaata
ggtacagaagttaaagaaggtgatattttaattggtaaagttaccccaaagggggaggta
gatgttaccccagaagcaaggcttttgaaagctatttttggtgataaagcaggcgatgta
aagaatacctctttaagagtcccatctggcatggaaggtattgtaatcgataccaaaatt
ttctctagccctgaaagaaataagcaaaataaggaaaaaatcaaaaaagaactagagctc
ttaaagaaggcacatgccaaacatttactaaaattgcgtgatatagctattaaaaagttg
tcagttgttttagatggggtggttactaatggtatttatcatcagtttggcgatgaaatt
attgcagagggtatacacctgacagcttcactcattgctgaaaagctttttccttctaaa
aatatttaccgtgatgagtccctttacaatgttccggcagaagccaatctaattggagat
cttgtgctgagtaattggacggctgatccatctaaaaatgatttggtgcagcgtattgta
ggcaattacattaaaaagtatacagagtctattgtgcgttttaaacgtgaaaggtttacg
ctagaagcaggtgatgggctacccaaaggggttgtaaaagtagctaaggtctatattgca
gaaaaaagaaagcttaaggttggtgataaaatgtctggaagacatggtaataaaggtatt
gtttgtaagatagttcctcaagaggatatgcccttcttagcagatggaacgccagtagat
gtcgtgttgagtccacttggattgccttctcgtatgaacttaggtcagttatatgaagca
gtgttaggatgggctggttatcaattaggcaagcggtataccaatcctatttttgagggt
atgaccctggatcagatctccagtgagttggatcaagctggcttgcctgcttttggtaaa
acaaccgtttatgatgggggaacgggtatgccatttgatcaaaaagttacagttggggtc
gtatatcttctcaagcttgcccatttggtagatgataaaatgcatgcccgttctacaggt
ccttattcattgattacccagcaaccattaggcggtaaagcccaatttggaggacagaga
tttggtgaaatggaggtatgggcattggaagcatatggcgctgcctatactttacaagaa
atgctcaataccaaatcagatgatgtagtcggtaggtctaaagcctatgaagccattgtg
aaaggtaataatattccaaagccaaatttatccgagtcattcaatgtattgattcatgaa
ctaagggggctaggtcttgaaattacacttgtataa
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integrated database retrieval system
