Comamonas endophytica: M9799_00535
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Entry
M9799_00535 CDS
T09983
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cenp
Comamonas endophytica
Pathway
cenp03030
DNA replication
cenp03430
Mismatch repair
cenp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9799_00535 (dnaE)
03430 Mismatch repair
M9799_00535 (dnaE)
03440 Homologous recombination
M9799_00535 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cenp03032
]
M9799_00535 (dnaE)
03400 DNA repair and recombination proteins [BR:
cenp03400
]
M9799_00535 (dnaE)
Enzymes [BR:
cenp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M9799_00535 (dnaE)
DNA replication proteins [BR:
cenp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M9799_00535 (dnaE)
DNA repair and recombination proteins [BR:
cenp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M9799_00535 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UYG51778
LinkDB
All DBs
Position
complement(116026..119562)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFVHLRLHSEFSVIDGTTRINAIVKAAAADGQPALAITDYNNMFGAIKFYKEGRGKGVKP
VLGTEIQLEGEEGAAPSRVVLLVQNKTGYHNLCELLARGWTRNVVRSQACYTWEWLQELG
EGLIVLSGAQAGPVGQALMRGDLPGATNQALRLAKMFPHRFYMELQRAGRADDEAHVLAA
VQLAARLNLPVVATHPIQFAGPDDYEAHEARVCIAEGEILGNPKRVRRFTREQHFKTQAE
MQALFADLPSALANSVEIARRCSLTLVLGKPQLPNFPVPEGMTEESFFRKESFDGLEVRL
ELLYPDAARRDAERPRYVERLEFELNTILKMGFPGYFLIVGDFIKWAKNNGCPVGPGRGS
GAGSLVAYVLNITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKQRYGR
DAVSQIATFGTMAARAAIRDVGRVLDMSYTFCDGISKLIPNKPGLHVTLKYPPNPKKDGD
KYTYAIEAEPLLAERIEKEEDVKTLIEMAQRLEGMTRNIGMHAGGVVIAPGRLADFCPLY
QQPGSDSAVSQFDKDDVESVGLVKFDFLGLATLTILEIAREFIMQRHKGQENFAYERIPL
DDHLTYKLFSEGKTEAVFQFESRGMQGMLRDAKPSRLEDLIALNALYRPGPMDLIPSFVA
RKHGREVVEYPHPMVEKVLAETYGIMVYQEQVMQTAQVLGGYSLGGADLLRRAMGKKKAD
EMAKHRELFREGAAKNGLDEAKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHY
TAEFFCANMTVEMDDTDKLKVLYEDALKMGLTFEPPDVNRGRHRFEPVTDKVIRYGLGAV
KGGGQAAIEAIVAAREGTGTGPRGSEKGPFKSLFDFCVRVDRTRLNKRTLEALIKAGAFD
SIHQNRAALVASIDTAFEFANATHANANQGGLFDMMGDDAVGSSTQEPELAERLPWGIKE
RLTFEKTAVGFYLSGHLFDEVETEVRRFVRTRIEEMRDSREPQVMAGIISDFRAITGQRG
RLGLFKIDDKSGTIEASADEGVLNAHKELLKEDEFVVVSGRLQLDHFSGGLRMKVQQLWS
LADARCKFGRYLQVSVGETMPDVLRVLGDFPARRVEQEQAEPLVHGLRVRLGLRCESPRG
AATAELQLGEQSRFYPSDAALAAWSAQAGSGQAVVIYE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcatctgcgcctgcactccgagttctccgtcatcgatgggaccacccgtatc
aacgccatcgtgaaggccgctgccgccgatgggcagcccgcgctggccatcaccgactac
aacaacatgttcggtgcgatcaagttctacaaggaagggcggggcaagggcgtcaagccg
gtgctgggcaccgagatccagctcgagggcgaggagggcgcggccccttcgcgcgtggtc
ctgctggtgcagaacaagaccggctaccacaacctgtgcgagctgctggcgcgcggctgg
acgcgcaatgtcgtcaggtcgcaggcctgctacacctgggagtggctgcaggaactgggc
gaggggctcatcgtgctgtcgggcgcgcaggccggccccgtggggcaggcgctgatgcgc
ggtgacctgccgggcgccaccaaccaggcgctgcggctggcgaagatgttcccgcaccgc
ttctacatggagctgcagcgcgcgggccgcgcggacgacgaggcgcatgtgctggcggcc
gtgcaattggccgcgcgcctgaatcttccggtggtggccacgcacccgatccagttcgcc
ggccccgacgactacgaagcccatgaggcgcgcgtgtgcattgccgagggcgagatcctg
ggcaaccccaagcgcgtgcggcgcttcacgcgcgagcagcacttcaagacccaggccgag
atgcaggcgctgttcgccgacctgccctcggcactggccaacagcgtggagatcgcgcgc
cgctgcagcctgacgctggtgctgggcaagccgcagctgcccaacttccccgtgcccgag
ggcatgaccgaagagtcgttcttccgcaaggagtccttcgacgggctggaagtgcggctg
gagctgctctatcccgatgccgccaggcgcgacgccgagcgcccgcgctatgtggagcgg
ctcgagttcgagctgaacaccatcctgaagatgggcttccccggctacttcctgatcgtg
ggcgacttcatcaagtgggccaagaacaacggctgcccggtcggcccgggccgcggttcg
ggcgcgggctcgctggtcgcctacgtgctgaacatcaccgacctggacccactggaatac
aacctgctgttcgagcgcttcctgaacccggagcgggtgtcgatgcccgacttcgacatc
gacttctgccagtccaaccgcgaccgcgtcatcgactacgtcaagcagcgctacggccgc
gacgcggtcagccagatcgcgaccttcggcaccatggccgcgcgcgccgccatccgcgac
gtgggccgggtgctggacatgagctacaccttctgcgacggcatctccaagctgatcccg
aacaagcccggcctgcacgtcacgctgaaatacccgccgaatccgaagaaggacggcgac
aagtacacctacgcgatcgaggccgagcccctgcttgccgagcgcatcgagaaggaagag
gacgtcaagacgctgatcgagatggcccagcgcctggaaggcatgacgcgcaatatcggc
atgcacgccggcggcgtggtcattgcgccggggcggctggccgatttctgcccgctctac
cagcagccgggcagcgattcggccgtcagccagttcgacaaggacgatgtcgagtcggtc
ggcctggtcaagttcgacttcctgggcctggcgacgctcacgatcctggagatcgcgcgc
gaattcatcatgcagcgccacaagggccaggagaatttcgcctacgagcgcattccgctc
gacgaccatctgacctacaagctgttctccgaaggcaagaccgaggcggtgttccagttc
gaaagccgcggcatgcagggcatgctgcgcgacgccaagccgagccgcctcgaggacctg
atcgcgctcaacgcgctgtaccgcccgggcccgatggacctgatccccagcttcgtggcg
cgcaagcacgggcgcgaggtggtcgagtacccgcacccgatggtcgagaaggtgctggcc
gagacctacggcatcatggtctaccaggagcaggtgatgcagaccgcgcaggtgctcggc
ggctactcgctgggcggcgccgacctgctgcgccgcgcgatgggcaagaagaaggccgac
gagatggccaagcaccgcgaactgttccgcgaaggcgcggccaagaacgggctggacgag
gcaaaggccgacgaggtcttcgacctgatggagaagttcgccggctacggcttcaacaag
tcgcacgccgccgcctactcgctgctggcctaccacaccggctggctcaaggtgcactac
acggccgagttcttctgcgccaacatgacggtggaaatggacgacaccgacaagctcaag
gtgctctacgaagacgcgctgaagatgggtttgaccttcgagccgccggacgtgaaccgc
ggccgccaccgcttcgagcccgtgaccgacaaggtcatccgctacggcctgggcgccgtc
aagggcggcgggcaggcggccatcgaggccatcgtcgccgcgcgcgaaggcacgggcacc
ggcccgcgcggttcggagaaggggccgttcaagagcctgttcgacttctgcgtgcgcgtg
gaccgcacgcggctgaacaagcgcacgctcgaagccctgatcaaggccggggccttcgac
tccatccaccagaaccgcgcggcgctggtggcgtccatcgacaccgccttcgagttcgcc
aacgccacccatgccaacgccaaccagggcggcctgttcgacatgatgggcgacgacgcc
gtgggctcgagcacgcaggagccggagctggccgagcgcctgccctggggcatcaaggag
cggctcaccttcgagaagaccgccgtgggtttctacctctcgggccatctgttcgacgag
gtcgaaaccgaggtgcggcgcttcgtgcgcacgcgcatcgaggagatgcgcgacagccgc
gagccgcaggtcatggccggcatcatcagcgatttccgcgccatcaccggccagcgcggg
cgcctgggcctgttcaagatcgacgacaagtccggcaccatcgaggcctcggccgacgag
ggcgtgctcaacgcgcacaaggagctgctcaaggaggacgagttcgtcgtcgtcagcggc
cggctgcagctcgaccacttcagcggcggcctgcgcatgaaggtgcagcagctgtggagc
ctggccgatgcgcgctgcaagttcgggcgctatttgcaggtcagcgtgggcgagaccatg
cccgacgtgctgcgcgtgctgggcgacttcccggcgcggcgcgtggagcaggagcaggcc
gagcccctggtgcacggcctgcgcgtgcgcctgggcctgcgctgcgagtcgccgcgcggc
gcggccacggccgagctgcagctgggcgagcaaagccgcttctaccccagcgacgcggcg
ctggcggcctggtcggcccaggcgggcagcggccaggccgtggtcatctacgaatga
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