Comamonas endophytica: M9799_01595
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Entry
M9799_01595 CDS
T09983
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cenp
Comamonas endophytica
Pathway
cenp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9799_01595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cenp03019
]
M9799_01595
Enzymes [BR:
cenp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M9799_01595
Messenger RNA biogenesis [BR:
cenp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M9799_01595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
UYG51969
UniProt:
A0ABY6GAA3
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All DBs
Position
363502..365325
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AA seq
607 aa
AA seq
DB search
MTFEELNLAPAILKAVLEQGYDTPTPIQAKAIPAVLQGQDLLAGAQTGTGKTAAFALPML
NRLIDSDSATSKFGNKGVRALILTPTRELAAQVEESVRAYSKYLDGISSTVIFGGVGMNP
QIDRIKRGVDILVATPGRLLDLQQQGFLDLSTVQILILDEADRMLDMGFIHDVKKVLALV
PKNKQSLLFSATFSDEIRELANSLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQALL
HIIQEHDWSQVLVFTRTKFGANNVAEFLTKNGVSAMALHGNKSQSARTQALAGFKSGDIR
ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSMVCMDEEGFM
MDIERFTKQEIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARTE
MMERIRANKPAAGERGGKPQGDGPRGNGGGKGRGAAQGNGEGRGPGNGARNANGPRGAGG
RGAGPRGAGPRQGGQGFGGERHDEHRSPRPAREGGASRFDDQPPRANAHLGTQLGRPVTP
RGSSAGGQPDPMRTSVDSMADRGRRGGGFRSGGGGGGSGGFGGGRSGGGGGFGGGGRNGG
GRGGFNR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagaactgaatctggctcccgccatcctgaaggctgtgctcgagcagggc
tacgacacgcccacgcccatccaggccaaggccattccggccgtgctgcagggccaggac
ctgctggccggcgcgcagaccggcaccggcaagaccgccgcgtttgcgctgcccatgctc
aatcgcctgatcgatagcgacagcgcgaccagcaagttcggcaacaagggcgtgcgggcg
ctgattctcacgccgacgcgcgaactcgcggcgcaggtggaggagtcggtgcgcgcctat
tcgaagtatctcgatggcatcagttccaccgtgatcttcggcggcgtgggcatgaacccg
cagatcgaccgcatcaagcgcggcgtcgacatcctggtggccacgccgggccgcctgctg
gacctgcagcagcagggcttcctcgatctgtccaccgtgcagatcctgatcctggacgaa
gccgaccgcatgctggacatgggtttcatccatgacgtgaagaaggtcttggccctggtg
ccgaagaacaagcagagcctgctgttctccgccacgttcagcgacgagatccgcgaactc
gccaactcgctgctgaagaacccgcagagcatccaggtcacgcccagcaacacgacggtg
cagcgcatcacgcaggtcatccaccccgtgggccgcggcaagaagaagcaggcgctgctg
cacatcattcaggagcatgactggagccaggtcctggtgttcacgcgcaccaagttcggc
gccaacaacgtggccgagttcctcaccaagaacggcgtcagcgccatggcgctgcacggc
aacaagagccagagcgcgcgcacccaggcgctggccggcttcaagagcggcgacatccgc
gcgctcgtggccaccgacatcgcggcgcgcggcatcgacatcgacgagctgccccacgtt
gtcaactacgaaatccccaacgtctccgaagactacgtgcaccgcatcggccgcacgggc
cgcgccggccgcgagggccatgccgtgagcatggtctgcatggacgaggaaggcttcatg
atggacatcgagcgcttcaccaagcaggagattccggtgcaggtgctcgagggcttcggc
cccgaggaaggcgagaaggccgagcccatcgccatgggccgccagaccatctggggcggc
gcgggcaagccgcccagccgtgacgtgatgcaggcggccgccaaggccgcgcgcaccgag
atgatggaacgcatccgcgccaacaagcccgccgcgggcgaacgcggcggcaagccccag
ggcgacggcccccggggcaatggtggcggcaagggccgcggtgccgcgcagggcaacggc
gaaggccgtggccccggcaatggcgcgcgcaacgccaacggcccgcgtggcgccggtggc
cgtggcgcgggtccccgcggtgcgggtccgcgccagggcgggcaaggctttggcggcgaa
cgccatgacgagcaccgcagcccgcgtccggcacgcgaaggcggcgcgtcccgcttcgac
gaccagcccccacgcgccaatgcgcacctgggtacccagctgggccgcccggtgaccccg
cgtggcagctcggccggcggccagcccgaccccatgcgcaccagcgtcgacagcatggcc
gatcgcggccgccgcggcggcggtttccgcagcggcggtggcggcggtggcagcggtggc
tttggcggcgggcgcagcggcggtggcggtggcttcggcggcggtggccgcaatggcggc
ggccgcggcggcttcaaccgctga
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