Comamonas endophytica: M9799_02650
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Entry
M9799_02650 CDS
T09983
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cenp
Comamonas endophytica
Pathway
cenp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9799_02650 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cenp03021
]
M9799_02650 (rho)
03019 Messenger RNA biogenesis [BR:
cenp03019
]
M9799_02650 (rho)
Transcription machinery [BR:
cenp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M9799_02650 (rho)
Messenger RNA biogenesis [BR:
cenp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M9799_02650 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
S1CSD-TOTE-2
AAA
Spore_III_AA
AAA_22
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UYG52158
UniProt:
A0ABY6GB49
LinkDB
All DBs
Position
613368..614630
Genome browser
AA seq
420 aa
AA seq
DB search
MHLNELKAQHVSEVLKQAEELEIENVGRMRKQEIMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
GGPPEQNKHKVMFENLTPLFPKEQLRLEREIKSDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTMMMQNIAHAITANHPDVHMMVLLVDERPEEVTEMQRSVKGEIIASTFDEPATRHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELHLNRRLYEKRVFPAIEL
NKSGTRREELLLSTEILNKTRILRQFLYNMDDIEATELMIKNMKATKTNNDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaatgaactcaaggcacagcacgtgtctgaagtcctgaagcaggccgaagag
ctcgagatcgaaaacgttggccggatgcgcaaacaggaaatcatgtttgccatcatcaag
aagcgcgcgaaggccggcgaacaggtatttgccgacggtgtgctcgagatcctgcccgat
ggcttcggcttcctgcgcagccccgataccagctacaccgccagcacggacgacatctac
atctcccccagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggcgaa
gtgcgcacgcccaaggacggcgagcgctatttcgcgctgaccaagctcgacaaggtcaac
ggcggcccgccggagcagaacaagcacaaggtgatgttcgagaacctgacgccgctgttc
cccaaggagcagctgcgcctggaacgcgagatcaagtcggacgagaacatcaccggccgc
atcattgacatcatcgcccccatcggccgcggccagcgcgcgctgatcgtcgccccgccc
aagagcggcaagacgatgatgatgcagaacatcgcccacgccatcaccgccaaccacccc
gacgtgcacatgatggtgctgctggtcgacgagcgcccggaagaagtcacggaaatgcag
cgctcggtcaagggcgagatcattgcctcgaccttcgacgagccggccacgcgccacgtc
cacgtggccgaaatggtcatcgagcgcgccaagcgcctggtcgagctgaagaaggacgtc
gtgatcctgctggactcgatcacgcgcctggcccgcgcctacaacaacgtcgtgccctcg
tcgggcaaggtgctgtcgggcggtgtcgattccaacgcgctgcagcgccccaagcgcttc
ttcggcgcggcgcgcaaggtcgaggaaggcggttcgctgaccatcatcgccaccgccctg
gtcgataccggcagccgcatggacgaagtgatcttcgaggagttcaagggtacgggcaac
agcgaactgcacctgaaccgccgcctctacgagaagcgcgtgttcccggccatcgagctc
aacaagagcggcacgcgccgcgaggagctgctgctgtcgaccgagatcctgaacaagacg
cgcatcctgcgccagttcctatacaacatggacgacatcgaggccaccgagctgatgatc
aagaacatgaaggcgacgaagaccaacaacgacttcttcgacatgatgcgccgcggcggc
taa
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