Comamonas endophytica: M9799_02875
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Entry
M9799_02875 CDS
T09983
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cenp
Comamonas endophytica
Pathway
cenp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9799_02875 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cenp03019
]
M9799_02875 (rnr)
03016 Transfer RNA biogenesis [BR:
cenp03016
]
M9799_02875 (rnr)
Enzymes [BR:
cenp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M9799_02875 (rnr)
Messenger RNA biogenesis [BR:
cenp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M9799_02875 (rnr)
Transfer RNA biogenesis [BR:
cenp03016
]
Prokaryotic type
tRNA degradation factors
M9799_02875 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
UYG52201
LinkDB
All DBs
Position
complement(669069..671393)
Genome browser
AA seq
774 aa
AA seq
DB search
MNLSTNSAPATEEIEGSVQGHRDGHGFVLRDDGEKDIFIPANEMRAVLHKDRVKVQIVRY
DRRGRPEGRVTEIIERPTKTIIGRLLQESGVWLVAPEDKRYGQDVLIPANATGTAKTGQV
VVAELTESPALFGQPVGRITEVLGEVDDAGMEIEIAVRKYDVPHEFSPECLEQTKALPDK
VRAIDRRQRIDLTDVPLVTIDGEDARDFDDAVYCEPAKIGRSKGWRLLVAIADVSHYVRT
GSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLVTAKGEIHAY
QFYPAVMHSHARFTYTEVAAILTNTRGPEAQRRSARVPDLLNLHGVYQSLLKARQARGAV
DFETTETQIVSDENGRIEKIIPRTRNEAHKLIEEAMLAANVCSADFIAQSGQNGLFRVHD
KPSLEKQEVLRNYLKAMAVGMSISENPKPAEFQAIAQATKERPDAPQIHTMLLRSMMQAI
YTPVNEGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKSELEGKRYRLPALPTPGEAHAKLA
KRLATRVSAPGQSPRKKPAGGAELQAWEAAGLHCSANERRADEASRDVESWLKCKYMREH
LGEEFSGTVTAVTSFGIFVTLDAMYVEGLVHITELGGEYFKFDETRQELRGERSGIRYAI
GSRLRVQVSRVDLDGRRIDFRLVQEGGEALPSRSGSGGSSGKRGAREERSPREERGRRDD
ALQYDDAPQGRRQRGSRSMPSLPPPSPIEGLKASVRRAASSPKPSGKPKRKPRR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcagcacaaactctgcccccgcaaccgaagaaatcgaaggcagcgtgcagggt
catcgcgatggccatggtttcgtattgcgcgatgacggcgaaaaagacatcttcatcccc
gccaatgaaatgcgcgcagtgctgcacaaggaccgcgtcaaggtccagatcgtgcgctac
gaccggcgcgggcggcccgaagggcgcgtgaccgagatcatcgagcgcccgacgaagacc
atcatcggccggctgctgcaggaaagcggcgtctggctggtcgcccccgaagacaagcgc
tacggccaggacgtgctgattcccgccaacgccaccggtaccgccaagaccggccaggtc
gtggtggccgagctcaccgaatcgccggccctgttcggccagcccgtggggcgcatcacc
gaagtgctgggcgaggtcgacgacgcgggcatggagatcgagatcgcggtgcgcaagtac
gacgtgccgcacgagttctcgcccgagtgcctggagcagaccaaggcgctgcccgacaag
gtgcgggccatcgaccgcaggcagcgcatcgacctgaccgacgtgccgttggtcaccatc
gacggcgaggacgcgcgcgacttcgacgacgccgtctattgcgagcccgccaagatcggc
cgcagcaagggctggcgcctgctggtggccattgccgacgtgagccactacgtgcgcacc
ggcagcgccatcgacatcgatgcctacgaccgcgccaccagcgtctatttcccgcgccgc
gtgattcccatgctgccggagaagctcagcaacgggctgtgctcgctgaaccccgacgtg
gaccgcctgtgcatggtctgcgacatgctggtaacagccaagggcgagatccacgcctac
cagttctatccggcggtcatgcacagccatgcgcgcttcacctataccgaggtcgcggcc
atcctcaccaatacgcgcggccccgaggcccagcgccgcagcgcgcgcgtgcccgacctg
ctcaacctgcatggcgtctaccagtcgctgctcaaggcgcgccaggcgcgcggtgcggtg
gacttcgagaccaccgagacgcagatcgtcagcgacgagaacggccgcatcgagaagatc
atcccgcgcacgcgcaacgaggcgcacaagctgatcgaggaggcgatgctggcggccaat
gtctgcagcgccgatttcatcgcgcaaagcggacagaacgggctgttccgcgtgcacgac
aagccctcgctggaaaagcaggaagtgctgcgcaactatctcaaggccatggccgtgggc
atgtcgatcagcgagaaccccaagcccgccgagttccaggccatcgcgcaggccaccaag
gagcgtcccgacgcgccgcagatccacaccatgctgctgcgctcgatgatgcaggccatc
tacacgccggtgaacgaagggcacttcggcctggccttcgaggcctacacccatttcacc
agcccgatccggcgctatcccgacctgctggtgcaccgcgtgatcaagtcggaactcgaa
ggcaagcgctaccgcctgccggcgctgccgacaccgggcgaagcccacgccaagctggcc
aagcggctggccacgcgcgtgagcgcgcccggccagagtccgcgcaagaagcccgcgggc
ggcgccgagctgcaggcctgggaagcggccgggctgcactgcagcgccaacgagcgccgc
gccgacgaagccagccgcgatgtcgagtcgtggctcaagtgcaagtacatgcgcgagcac
ctgggcgaggaattctcgggcaccgtcacggccgtcacctccttcggcatcttcgtgacg
ctggacgcgatgtatgtcgagggcctggtgcacatcaccgagctgggcggcgaatacttc
aagttcgacgagacgcgccaggagctgcgcggcgagcgctcgggcatccgctatgcgatc
ggctcgcgcctgcgcgtgcaggtcagccgcgtcgatctcgacggccggcgcatcgacttc
cgcctggtgcaggagggcggcgaggcgctgccgtcgcgcagtggaagtggtggcagcagc
ggcaagcgcggcgcgcgtgaggaacgcagcccgcgcgaggaacgcggccggcgcgacgat
gccctgcaatacgacgatgcgccgcaggggcgccgccagcgtggcagccgctccatgcct
tcgctgccgccgccgtcgcccatcgagggcttgaaggcctcggtgcgccgggctgccagt
tcgcccaagccctcgggcaagcccaagcgcaagccgcggcgctga
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