Comamonas endophytica: M9799_03340
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Entry
M9799_03340 CDS
T09983
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
cenp
Comamonas endophytica
Pathway
cenp02024
Quorum sensing
cenp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M9799_03340 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M9799_03340 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cenp03019
]
M9799_03340 (hfq)
03036 Chromosome and associated proteins [BR:
cenp03036
]
M9799_03340 (hfq)
Messenger RNA biogenesis [BR:
cenp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
M9799_03340 (hfq)
Chromosome and associated proteins [BR:
cenp03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
M9799_03340 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
UYG52287
UniProt:
A0ABY6GB31
LinkDB
All DBs
Position
complement(781999..782256)
Genome browser
AA seq
85 aa
AA seq
DB search
MSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STIVPGRAVNFSTAETAADNEAAGA
NT seq
258 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaaaggccaactccttcaagacccgttcctcaacgcgctgcgccgcgagcat
gtgccggtgtccatctatctggtcaacggcatcaagctgcagggccagatcgagtccttc
gaccaatatgtcgtgctgctgcgcaacaccgtcacgcaaatggtgtacaagcacgcgatt
tccaccatcgttcccggccgtgccgtgaacttctccacggctgaaaccgccgcagacaac
gaagccgccggcgcctga
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