KEGG   Comamonas endophytica: M9799_03340
Entry
M9799_03340       CDS       T09983                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
cenp  Comamonas endophytica
Pathway
cenp02024  Quorum sensing
cenp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cenp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M9799_03340 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    M9799_03340 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cenp03019]
    M9799_03340 (hfq)
   03036 Chromosome and associated proteins [BR:cenp03036]
    M9799_03340 (hfq)
Messenger RNA biogenesis [BR:cenp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     M9799_03340 (hfq)
Chromosome and associated proteins [BR:cenp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    M9799_03340 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UYG52287
UniProt: A0ABY6GB31
LinkDB
Position
complement(781999..782256)
AA seq 85 aa
MSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAI
STIVPGRAVNFSTAETAADNEAAGA
NT seq 258 nt   +upstreamnt  +downstreamnt
gtgagcaacaaaggccaactccttcaagacccgttcctcaacgcgctgcgccgcgagcat
gtgccggtgtccatctatctggtcaacggcatcaagctgcagggccagatcgagtccttc
gaccaatatgtcgtgctgctgcgcaacaccgtcacgcaaatggtgtacaagcacgcgatt
tccaccatcgttcccggccgtgccgtgaacttctccacggctgaaaccgccgcagacaac
gaagccgccggcgcctga

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