Comamonas endophytica: M9799_08505
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Entry
M9799_08505 CDS
T09983
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cenp
Comamonas endophytica
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cenp03016
]
M9799_08505
Enzymes [BR:
cenp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
M9799_08505
Transfer RNA biogenesis [BR:
cenp03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
M9799_08505
Prokaryotic type
tRNA splicing ligases
M9799_08505
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
UYG50164
UniProt:
A0ABY6G6T8
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All DBs
Position
complement(1898593..1899822)
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AA seq
409 aa
AA seq
DB search
MPKQTYNVQEVPGGVPVKMWTKGVPVEEEARQQLANAARLPIVFKHIAAMPDVHLGIGAT
VGSVIPTLKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDNLGKLRSAIEKAVPHGSAPKHK
GRDVGSWGDRPPETVDKAWAGLADEFDALCELHPRLRHTNNRKHLGTLGSGNHFIEVCLD
EVGFVWFMLHSGSRGVGNAIGTHFIELAKKDAERHQRNLPDQDLAYFEEGAQYFGDYVRG
VSWAQKFAMKNREVMMANLIATVRSVITKPFEVYVEAVNCHHNYVQQERHFGQDVFVTRK
GAVSARRGEMGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKMFTVADQVR
ATAGVECRKDANVIDEIPMAYKDIDAVMAAQSDLVEVVHTLKQVVCVKG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacagacctacaacgtacaagaagtcccaggaggcgtccccgtaaaaatgtgg
accaaaggcgttcccgtcgaagaagaagcccgccaacaactagccaacgccgctcgcctc
cccatcgtcttcaagcacatcgccgccatgcccgacgtgcacctgggcattggcgccact
gtgggttcggtgatccccacgctcaaggcgatcatcccggcggccgtgggtgtggatatc
ggctgcgggatgatggcggcgaagaccacgctgcgcgccgaggatctgccggacaatctg
gggaagctgcgctcggccatcgagaaagcggtgccgcatggctcggcgcccaagcataag
gggcgcgacgtgggcagttggggcgacaggccgccggagacggtggacaaggcctgggct
gggctggccgatgagttcgatgcgctgtgcgagctgcatccgcggctgaggcataccaac
aaccgcaagcacctgggcacgctgggcagcggcaatcactttatcgaggtctgcctggac
gaggtcggcttcgtgtggttcatgctgcactcgggctcgcgcggggtgggcaatgccatt
ggcacgcatttcatcgagctggcgaagaaggatgcggagcggcaccagcgcaatctgccc
gatcaggacctggcctatttcgaggaaggggcgcagtatttcggcgactatgtgcgcggc
gtgtcgtgggcgcagaagtttgcgatgaagaaccgcgaggtgatgatggccaacctcatc
gccacggtgcgctcggtcattaccaagcctttcgaggtctacgtcgaggcggtcaactgc
caccacaactatgtgcagcaggagcgccacttcggccaggatgtgttcgtcacgcgcaag
ggcgcggtgagcgcgcggcgtggcgagatgggcatcattccggggagcatgggggcgcgc
agctatatcgtgcgcgggctgggcaatccggagagcttcgagagctgcagccatggcgcg
ggccgggtcatgagccgcaccaaggcgaagaagatgttcacggtcgcggaccaggtccgg
gccacggcgggggtcgagtgccgcaaggatgccaacgtcatcgacgagattcccatggcc
tacaaggacatcgatgccgtcatggcggcgcagagcgatctggtcgaggtggtgcatacc
ttgaagcaggtcgtttgcgtgaaggggtaa
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