Comamonas endophytica: M9799_10860
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Entry
M9799_10860 CDS
T09983
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
cenp
Comamonas endophytica
Pathway
cenp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
M9799_10860
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
cenp02022
]
M9799_10860
02035 Bacterial motility proteins [BR:
cenp02035
]
M9799_10860
Two-component system [BR:
cenp02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
M9799_10860
Bacterial motility proteins [BR:
cenp02035
]
Pilus system
Twitching motility proteins
M9799_10860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
AAA_5
HTH_23
AAA
HTH_28
HTH_30
AAA_3
Motif
Other DBs
NCBI-ProteinID:
UYG50596
UniProt:
A0ABY6G6E0
LinkDB
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Position
complement(2412095..2413537)
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AA seq
480 aa
AA seq
DB search
MPDIAASILVIDDEPDLRTLYELTLLREGYRVETADCVHEARAQLQAQRFDAVLTDMRLP
DGLGLELLHELRAQQRPERCVVITAHSSAENAVEALRAGAFDYLSKPVDLKQFRAVVASA
VRRPADSGDAALRGARGAGPRDIELLVADPASALAQLVGESPAMRAVKQNILKVAKSMAP
VLVQGESGTGKELVARALHACSHRADGPLVAVNCGAIPDNLLEAEFFGARKGSYTGATQD
RGGYFQAARGGTLFLDEIGDLPLAMQAKLLRAIQERRVRPLGSTQEEAVDVRIVSATHRD
LAEEVAAGRFRQDLYYRLNVIEIRLPPLRERREDLPALCEVLLARIAAESGCAVPPLTAQ
VLEQLARLPLTGNVRELENQLHRALALGEDQQLSLDVAAADAAAADPFAPAPVATPGPLP
HDLQAWLDQQERDILVRALHEVGFNRTAAAARLGISLRQIRYRIARLNIAAPHDSDSSEH
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacatcgccgcctccatcctggtcatcgacgacgagcccgacctgcgcacgctc
tacgagctgacgctgctgcgcgagggctaccgcgtggaaaccgccgactgcgtgcacgag
gcgcgtgcgcagctgcaggcgcagcgcttcgacgccgtgctcaccgacatgcgcctgccc
gacggcctgggcctggagctgctgcacgagctgcgcgcccagcagcggcccgagcgctgc
gtggtcatcaccgcgcacagctcggccgagaacgccgtcgaggcgctgcgcgcgggcgcg
ttcgactacctgagcaagcccgtggacctcaagcagttccgcgccgtcgtggcctcggcc
gtgcgccggcccgccgactccggcgatgccgcgctgcgcggcgcgcgcggcgccggcccg
cgcgacatcgagctgctcgtggccgatcccgcgagcgcactggcgcagctggtgggcgaa
tcgccggccatgcgcgcggtcaagcagaacattctcaaggtcgcaaagagcatggccccg
gtgctggtgcagggcgaatcgggcaccggcaaggaactggtcgcgcgcgcgctgcatgcc
tgcagccaccgcgccgacggcccgctggtggcggtgaactgcggcgcgattcccgacaac
ctgctagaagccgagttcttcggcgcgcgcaagggctcctacaccggcgcgacccaggac
cgcggcggctacttccaggccgcgcgcggcggcacgctgttcctcgacgagatcggcgac
ctgccgctggccatgcaggccaagctgctgcgcgcgatccaggagcggcgcgtgcgcccg
ctgggctcgacccaggaggaggcggttgacgtgcgcatcgtcagcgccacgcaccgcgac
ctggccgaggaggtggcagccgggcgcttccgccaggacctgtactaccggctcaatgtc
atagagatccggctgccgccgctgcgcgagcgccgcgaggacctgccggcgctgtgcgag
gtgctgctggcgcgcatcgcggccgaaagcggctgcgccgtgccgccgctcaccgcgcag
gtgctcgaacagctggcgcggctgccgctcaccggcaatgtgcgcgagctggagaaccag
ctgcaccgcgcgttggcgctgggcgaggaccagcagctgtcgctcgatgttgcggcggcc
gacgccgcggcggccgacccgtttgcacccgcgccggtggccacgcccggccccctgccc
catgacctgcaggcctggctggaccagcaggagcgcgacatcctggtgcgcgcgctgcac
gaggtgggcttcaaccgcaccgcggctgccgcccggctgggcatcagcctgcgccagatc
cgctaccgcatcgcgcgcctgaacatcgccgcaccccatgacagcgacagcagcgagcac
tga
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