Comamonas endophytica: M9799_11115
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Entry
M9799_11115 CDS
T09983
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cenp
Comamonas endophytica
Brite
KEGG Orthology (KO) [BR:
cenp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cenp03032
]
M9799_11115
03400 DNA repair and recombination proteins [BR:
cenp03400
]
M9799_11115
Enzymes [BR:
cenp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M9799_11115
DNA replication proteins [BR:
cenp03032
]
Prokaryotic type
DNA Topoisomerases
M9799_11115
DNA repair and recombination proteins [BR:
cenp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M9799_11115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
HTH_Tnp_1
Motif
Other DBs
NCBI-ProteinID:
UYG50643
LinkDB
All DBs
Position
complement(2470861..2471895)
Genome browser
AA seq
344 aa
AA seq
DB search
MATLIYVDEQTEGWRRVRRGKGFSYVAQDGSPVRDPGHLERIRKLAIPPAYTDVWICPDA
NGHLQATGRDARGRKQYRYHALWQEHRTQAKFERMREFGHHLPAIRRAVERDLAQRRPGL
ELVAATAVRLLDATGIRIGNDEYSEQNGSYGLTTLKNRHAKATTSGLTLHFKGKSGVMQK
VSVADRRVARIVRRCQELPGQRLFQFLDENDELQHLRSDHVNDYLRSLCDEDFTAKDFRT
WHASVTAMELALQAREANAEAGILDEPAIADIVKQVAQRLGNTSAVCRKFYIHPEVLSYC
AREAEAGAGTPRKSGLSAPECALLQLLDSCQPAMKEPVRILAPA
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggccacgctgatctatgtcgacgagcagaccgaaggctggcgccgcgtgcgccgcggc
aagggcttttcctatgtggcgcaggacggcagcccggtgcgcgaccccgggcacctggag
cgcatccgcaagctggccattccgccggcctataccgatgtctggatctgccccgatgcc
aacggccacctgcaggccacggggcgcgatgcgcgcgggcgcaagcagtaccgctaccac
gcgctgtggcaggagcaccgcacgcaggccaagttcgagcgcatgcgcgagttcggccac
cacctgccggcgatccgccgcgccgtcgagcgcgatctggcgcagcgccgcccggggctg
gagctggtcgccgccaccgccgtgcggctgctggacgccaccggcatacgcatcggcaac
gacgaatattcggagcagaacggctcctacggcctcaccacgctgaagaaccgccacgcc
aaggccacgaccagcggcctgacgctgcatttcaagggcaagagcggcgtcatgcagaag
gtgtcggttgccgaccggcgcgtggcgcgcatcgtgcggcgctgccaggagctgccgggc
cagcggctgttccagttcctcgacgagaacgacgaactgcagcatctgcgctccgatcac
gtcaacgactacctgcgctcgctgtgcgacgaggatttcacggccaaggacttccgcacc
tggcatgccagcgtcacggcgatggagctggcgctgcaggcgcgcgaggccaatgccgag
gccggcatcctggacgagccggcgattgccgatatcgtcaagcaggttgcgcagcgcctg
ggcaacaccagcgcggtgtgccgcaagttctatatccaccccgaggtgctgagctattgc
gcacgcgaggccgaggctggagcgggcaccccgcgcaagtccggcctgagcgccccggag
tgcgcgctgctgcagctgctcgacagctgccagccggccatgaaggagcccgtcaggatc
ctggcccccgcatga
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