KEGG   Comamonas endophytica: M9799_16220
Entry
M9799_16220       CDS       T09983                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
cenp  Comamonas endophytica
Pathway
cenp00010  Glycolysis / Gluconeogenesis
cenp00020  Citrate cycle (TCA cycle)
cenp00260  Glycine, serine and threonine metabolism
cenp00280  Valine, leucine and isoleucine degradation
cenp00310  Lysine degradation
cenp00380  Tryptophan metabolism
cenp00620  Pyruvate metabolism
cenp00630  Glyoxylate and dicarboxylate metabolism
cenp00640  Propanoate metabolism
cenp00670  One carbon pool by folate
cenp00785  Lipoic acid metabolism
cenp01100  Metabolic pathways
cenp01110  Biosynthesis of secondary metabolites
cenp01120  Microbial metabolism in diverse environments
cenp01200  Carbon metabolism
cenp01210  2-Oxocarboxylic acid metabolism
cenp01240  Biosynthesis of cofactors
Module
cenp_M00009  Citrate cycle (TCA cycle, Krebs cycle)
cenp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
cenp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
cenp_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:cenp00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    M9799_16220 (lpdA)
   00020 Citrate cycle (TCA cycle)
    M9799_16220 (lpdA)
   00620 Pyruvate metabolism
    M9799_16220 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    M9799_16220 (lpdA)
   00640 Propanoate metabolism
    M9799_16220 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    M9799_16220 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    M9799_16220 (lpdA)
   00310 Lysine degradation
    M9799_16220 (lpdA)
   00380 Tryptophan metabolism
    M9799_16220 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    M9799_16220 (lpdA)
   00670 One carbon pool by folate
    M9799_16220 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cenp04147]
    M9799_16220 (lpdA)
Enzymes [BR:cenp01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     M9799_16220 (lpdA)
Exosome [BR:cenp04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   M9799_16220 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Biotin_lipoyl Pyr_redox FAD_oxidored GIDA Thi4 FAD_binding_2 AlaDh_PNT_C Biotin_lipoyl_2 DAO NAD_binding_8 FAD_binding_3 HI0933_like HlyD_3 GCV_H Lycopene_cycl DEC-1_N
Other DBs
NCBI-ProteinID: UYG51575
LinkDB
Position
3561105..3562988
AA seq 627 aa
MAIIDIKVPDIGDFDSVGVIELLVQPGDQVAVDQSLITVESDKASMEIPSSHAGVVKELR
VKIGDQVAQGSVVLTLEAQEAGEASAPAAPAPQAAAAPAPAAPAPAPAVELPKAAEGAAP
AVAAPVPQQYAGAAADVECDVVVLGGGPGGYSAAFRAADLGLKVVLVERYATLGGVCLNV
GCIPSKALLHVAAVMDEVKHLSAVGVDFGAPQVNIDQLRGHKEKVIGKLTGGLAQMAKMR
KVTVLRGYGQFAGTHHLSVELTQGEGTERSGGKQVVQFKNAIIAAGSQAVHLPFMPKDPR
VVDSTGALELKEVPKRMLILGGGIIGLEMGTVYSTLGARLDVVEMMDGLMQGADRDLVKI
WQKMNAPRFDNIMLKTKTVGAEATPEGIKVTFAAAEEGGTAPEPQTYDLVLQAVGRTPNG
KKIAAEAAGVAVTDRGFIPVDIQMRTSAPHIFAIGDIVGQPMLAHKAVHEAHVAAEVIAG
EQQGNKELAAAAFNARVIPSVAYTDPEVAWVGLTEDQAKAQGIKVRKGLFPWAASGRAIA
NGRDEGVTKLLFDDSPEAHGHGRILGGGMVGTHAGDMIGEIALAIEMGADAVDIGKTIHP
HPTLGESIGMAAEVAHGSCTDVPPARK
NT seq 1884 nt   +upstreamnt  +downstreamnt
atggccatcattgatatcaaggttcccgacatcggcgatttcgacagcgtcggcgtcatc
gagctgctggtgcagcctggcgaccaggtcgccgtggaccagagcctgatcaccgtcgag
tccgacaaggcctcgatggagatcccatcctcgcatgccggcgtcgtcaaggaactgcgc
gtgaagatcggcgaccaggttgcccaaggcagcgtggtgctgacgctcgaggcgcaggag
gccggcgaggcttcggcgcccgcggcgcccgcgccgcaggcagcagcggcgcctgcacct
gctgcaccggcacccgcgcccgcagtggaactgcccaaggccgccgagggtgccgcgccc
gccgtggccgctcccgtgccgcagcaatacgctggcgccgctgccgatgtcgaatgcgac
gtcgtggtgctgggcggcggcccgggcggctattcggccgcgttccgcgccgccgatctg
ggcctgaaggtcgtgctggtcgagcgctacgcgacgctcggcggcgtctgcctgaacgtg
ggctgcatcccctccaaggccctgctgcatgtggcggccgtcatggacgaggtcaagcac
ctgtcggcggtgggcgtggacttcggcgcgccccaggtcaacatcgaccagctgcgcggc
cacaaggaaaaggtcatcggcaagctgaccggcggcctggcgcagatggcgaagatgcgc
aaggtcacggtgctgcgcggctatggccagttcgccggcacccaccatctgtcggtggag
ttgacgcagggcgagggcaccgagcgcagcggcggcaagcaggtcgtgcagttcaagaac
gcgatcattgccgcgggctcgcaggccgtgcacctgccattcatgcccaaggacccgcgc
gtggtggattccacgggtgcgctcgagctcaaggaagttccgaagcgcatgctgatcctg
ggcggcggcatcatcgggctggagatgggtaccgtgtactcgacgctgggcgcgcgcctg
gacgtggtcgagatgatggacggcctgatgcagggcgccgaccgcgacctggtcaagatc
tggcagaagatgaacgccccgcgtttcgacaacatcatgctcaagaccaagaccgtgggc
gccgaggccacgcccgagggcatcaaggtcacgttcgcggcggcggaagagggcggcact
gcccccgagccgcagacctacgacctggtgctgcaggccgtgggccgcacgcccaacggc
aagaagatcgccgccgaggccgcaggcgtcgcggtgaccgaccgcggcttcattccggtc
gatatccagatgcgcaccagcgcgccgcatatcttcgccatcggtgacatcgtcggccag
ccgatgctggcgcacaaggcggtgcacgaggcccatgtcgcggccgaagtcatcgccggc
gaacagcagggcaacaaggagctggcggccgccgcgttcaatgcgcgtgtcatcccgagc
gtcgcctacaccgaccccgaggtcgcatgggtggggttgaccgaggatcaggccaaggcg
cagggcatcaaggtcaggaagggcctgttcccctgggccgcttcgggtcgcgccatcgcc
aacggccgcgacgagggcgtgaccaagctgctgttcgatgattcgcccgaggcccatggc
cacggccgcatcctgggcggtggcatggtcggcacgcacgccggcgacatgatcggcgag
atcgcgctggccatcgagatgggcgccgacgccgtcgacatcggcaagaccatccacccg
catcccacgctgggcgagagcatcggcatggcggcggaagtggcgcacggcagctgcacg
gacgttcctccggctcggaagtaa

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